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The map label for this gene is clpV1 [H]

Identifier: 77459634

GI number: 77459634

Start: 3891549

End: 3894089

Strand: Direct

Name: clpV1 [H]

Synonym: Pfl01_3412

Alternate gene names: 77459634

Gene position: 3891549-3894089 (Clockwise)

Preceding gene: 77459633

Following gene: 77459635

Centisome position: 60.44

GC content: 62.53

Gene sequence:

>2541_bases
ATGGAACTGGCCAGCCTGATCGGACGCCTCAACCCGGACAACCGCCGCGCCCTCGAACGTGCCGCGCAACGGTGCTTGCA
GCGCGGGCATCACTTTGTCGAGATCGAGCATCTGTTGCTGGAGTTGCTGGATATCGAGGGCGGCGATTTTGCTTTTCTGC
TGCCGCGCTTCGGGCTGGAGCGTGATGCGCTGACGGCGGAGATCAACAAGGCGCTGGACCTGTTCAAGACCGGCAGCACG
CGCACGCCAGCGCTGTCCTCGCACACGCTGGGATTGCTGGAAGACGCCGTGGTGCAGGCCAGTGTGCTGGGGATCGACAG
CATTCGTTCCGGGCTGCTTTTATTGGCGTTGATCGACCGTGACGAGCGCCGCAGCCTGCTGCTCAACAGTGCATCGTCAT
TGCTGCGAATTCCGAAAGAAGCCTTGCGCGCAAACCTGCTGGAATGGACGGAAAACTCCCGTGAGCACGTTGGCCCGCGC
TCTGTGTCTTCGGGGAGTCCAACGCCACGGCAAGACTCGGTGCTCGATCAATACACCCAGGATCTGACCGCCGATGCTCA
CGCCGGGCGCATCGACCCGATCGTCGGTCGCGATGGCGAAATTCGCCAGTGCATCGACATTCTTTTGAGGCGCCGGCAGA
ACAACCCGATTCTGGTCGGTGCGCCGGGCGTAGGCAAAACCGCCGTGGTCGAGGGCCTGGCGCTACGCATCGCCGCCGGG
GATGTGCCGCCGTCGTTGCAGGAAGTCAGTTTGCGGGTGCTCGACCTTGGTTTGCTCCAGGCTGGGGCCGGGGTCAAAGG
CGAATTCGAACAGCGGCTCAAAGGTGTGATTGACACGGTTCGCAGCGCCGACAAGCCGATCATCCTGTTCATCGATGAGG
CCCACACGCTGATCGGCGCTGGCGGTACCGAAGGTGGCAGCGATGCGGCCAACTTGCTCAAACCCGCGCTGGCCCGAGGT
GAGTTGCGCACGCTGGCCGCCACGACCTGGATGGAATACAAAAAATATTTCGAGAAAGACCCGGCCCTCGCCCGCCGCTT
CCAGCTGGTGCAGGTGGAAGAGCCGGATGAAATCACCGCCGTGGAAATGCTCCGTGGCGTCGCCGCCAAACTCGAACAGC
ACCACGGCGTGCAAGTGCTGGATGCCGCGATCCACGAAGCGGTGAAACTCTCGCATCGCTATATCTCTGGCCGCCAGTTG
CCGGACAAGGCCATCAGCGTCCTCGACACCGCCTGCGCCCGGGTTGCCCTCGGACAGCACGACGTGCCGCCACCGCTGGA
GAGCCTGCGCCACCGCCAGCAAAGCCTGAAAGAAGAAGTCGAACGCCTGCGCCGGGAACAGGCCACGGGGCTCGATCACC
GCGAGCGCATCACCCTGCTGGAAAGCGAATCGAAGACCAATGTCCAGGCCATCCGCGAACTGGAAACCCGTTGGAGTGAA
GAGCGCGTCGCCGTGCGCGAACTGCTCGACACCCGTCGCGAGTTACTGGCGCTGAGCGAAAGCGCCGACAGCGACAAGCC
CGACGAAGCCATCGACAGCCGCATCGATCACCTCGCCGCCGAACTGCTGCGCCTGGAAGCCGGACTCGATGCGATCCGCC
AGGACGATCCGCTGGTACCCGAACAGGTCGACGGCAAAACCGTCGCCGCCGTGATCGCCGGCTGGACCGGCATCCCCGTC
GGCAAAATGCTCGCCGACGAAGCCCATGCCGTGCGCACCCTCGGTACACGCATGGGCCAGCGCGTGATGGGCCAGAGCAC
TGCGCTCAACACCATCGCCCAACGATTGCAGGCCTATCGTGCGGGTCTCACCGATCCGCAAAAACCGGTTGGCGTGTTTC
TGCTGGTCGGCCCCACGGGCGTTGGCAAAACCGAAACCGCGTATGCACTGGCGGATGCCTTGTATGGCGGCGAACGCAAC
CTGATCAGCATCAACCTTTCCGAATATCAGGAAGCCCACACCGTCAGCCAGCTCAAGGGCGCACCGCCCGGTTACGTCGG
TTACGGAAGCGGCGGCGTGCTGACCGAGGCCGTTCGGCGCAAGCCGTATTCGGTGGTGTTGCTGGATGAAATCGAGAAGG
CGCATCCGGATGTGCTGGAAGCGTTTTACAACGTGTTCGACAAGGGCTTGATGGAAGACGGGACCGGGTTGGTGGTCGAC
TTCAAAAACACCGTGATGCTCGCCACCAGCAATGTCGGCGCCGAATTGCTGCTCGATACACCGACTGCACAACTCGGCTC
GGAAGCGTTCAACGAGGCGCTGCACAAAGTCCTCCTGCAAGCCTTCCGCCCGGCGTTTCTGGCACGCATGACGGTGGTCG
CGTATCGGCCGCTGGATGAGCAGACGCTTGAAGGGATCGTGTTGGCGAAGCTGGAGAAATTGCGCGGCCGTTACAAGGCT
GCGACGGGCAAGCAGTTCGAGTTCGATTCGGGAATTGTGAAAGCGGTGCTCGCCAAATGCAGTGCGGCAGGCGCGCGGGA
TGTCGAGAACGTTTTGATGACGCAGGTGACAGGGAAATTGGCGGAGTGGGTGTTGGAATGA

Upstream 100 bases:

>100_bases
ACCCCGGCCCTGTTGAGCTGGAACGGTGGCCTGCAACGGCAGACCAGCCTGGCCGTGCAACGGATCGAAACCCGCCTGCG
TCAGCTGGAGATCACCTGAA

Downstream 100 bases:

>100_bases
CCGCCGTCAACGAGAATTGACGGAACGCAAAAATGGCACCCGCGCAGGAGACGGAGTAATGACAGAAGCGGATTTTTTGA
ATGCGGTGCTGCAGGCAGCA

Product: ClpA/B-type protease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 846; Mature: 846

Protein sequence:

>846_residues
MELASLIGRLNPDNRRALERAAQRCLQRGHHFVEIEHLLLELLDIEGGDFAFLLPRFGLERDALTAEINKALDLFKTGST
RTPALSSHTLGLLEDAVVQASVLGIDSIRSGLLLLALIDRDERRSLLLNSASSLLRIPKEALRANLLEWTENSREHVGPR
SVSSGSPTPRQDSVLDQYTQDLTADAHAGRIDPIVGRDGEIRQCIDILLRRRQNNPILVGAPGVGKTAVVEGLALRIAAG
DVPPSLQEVSLRVLDLGLLQAGAGVKGEFEQRLKGVIDTVRSADKPIILFIDEAHTLIGAGGTEGGSDAANLLKPALARG
ELRTLAATTWMEYKKYFEKDPALARRFQLVQVEEPDEITAVEMLRGVAAKLEQHHGVQVLDAAIHEAVKLSHRYISGRQL
PDKAISVLDTACARVALGQHDVPPPLESLRHRQQSLKEEVERLRREQATGLDHRERITLLESESKTNVQAIRELETRWSE
ERVAVRELLDTRRELLALSESADSDKPDEAIDSRIDHLAAELLRLEAGLDAIRQDDPLVPEQVDGKTVAAVIAGWTGIPV
GKMLADEAHAVRTLGTRMGQRVMGQSTALNTIAQRLQAYRAGLTDPQKPVGVFLLVGPTGVGKTETAYALADALYGGERN
LISINLSEYQEAHTVSQLKGAPPGYVGYGSGGVLTEAVRRKPYSVVLLDEIEKAHPDVLEAFYNVFDKGLMEDGTGLVVD
FKNTVMLATSNVGAELLLDTPTAQLGSEAFNEALHKVLLQAFRPAFLARMTVVAYRPLDEQTLEGIVLAKLEKLRGRYKA
ATGKQFEFDSGIVKAVLAKCSAAGARDVENVLMTQVTGKLAEWVLE

Sequences:

>Translated_846_residues
MELASLIGRLNPDNRRALERAAQRCLQRGHHFVEIEHLLLELLDIEGGDFAFLLPRFGLERDALTAEINKALDLFKTGST
RTPALSSHTLGLLEDAVVQASVLGIDSIRSGLLLLALIDRDERRSLLLNSASSLLRIPKEALRANLLEWTENSREHVGPR
SVSSGSPTPRQDSVLDQYTQDLTADAHAGRIDPIVGRDGEIRQCIDILLRRRQNNPILVGAPGVGKTAVVEGLALRIAAG
DVPPSLQEVSLRVLDLGLLQAGAGVKGEFEQRLKGVIDTVRSADKPIILFIDEAHTLIGAGGTEGGSDAANLLKPALARG
ELRTLAATTWMEYKKYFEKDPALARRFQLVQVEEPDEITAVEMLRGVAAKLEQHHGVQVLDAAIHEAVKLSHRYISGRQL
PDKAISVLDTACARVALGQHDVPPPLESLRHRQQSLKEEVERLRREQATGLDHRERITLLESESKTNVQAIRELETRWSE
ERVAVRELLDTRRELLALSESADSDKPDEAIDSRIDHLAAELLRLEAGLDAIRQDDPLVPEQVDGKTVAAVIAGWTGIPV
GKMLADEAHAVRTLGTRMGQRVMGQSTALNTIAQRLQAYRAGLTDPQKPVGVFLLVGPTGVGKTETAYALADALYGGERN
LISINLSEYQEAHTVSQLKGAPPGYVGYGSGGVLTEAVRRKPYSVVLLDEIEKAHPDVLEAFYNVFDKGLMEDGTGLVVD
FKNTVMLATSNVGAELLLDTPTAQLGSEAFNEALHKVLLQAFRPAFLARMTVVAYRPLDEQTLEGIVLAKLEKLRGRYKA
ATGKQFEFDSGIVKAVLAKCSAAGARDVENVLMTQVTGKLAEWVLE
>Mature_846_residues
MELASLIGRLNPDNRRALERAAQRCLQRGHHFVEIEHLLLELLDIEGGDFAFLLPRFGLERDALTAEINKALDLFKTGST
RTPALSSHTLGLLEDAVVQASVLGIDSIRSGLLLLALIDRDERRSLLLNSASSLLRIPKEALRANLLEWTENSREHVGPR
SVSSGSPTPRQDSVLDQYTQDLTADAHAGRIDPIVGRDGEIRQCIDILLRRRQNNPILVGAPGVGKTAVVEGLALRIAAG
DVPPSLQEVSLRVLDLGLLQAGAGVKGEFEQRLKGVIDTVRSADKPIILFIDEAHTLIGAGGTEGGSDAANLLKPALARG
ELRTLAATTWMEYKKYFEKDPALARRFQLVQVEEPDEITAVEMLRGVAAKLEQHHGVQVLDAAIHEAVKLSHRYISGRQL
PDKAISVLDTACARVALGQHDVPPPLESLRHRQQSLKEEVERLRREQATGLDHRERITLLESESKTNVQAIRELETRWSE
ERVAVRELLDTRRELLALSESADSDKPDEAIDSRIDHLAAELLRLEAGLDAIRQDDPLVPEQVDGKTVAAVIAGWTGIPV
GKMLADEAHAVRTLGTRMGQRVMGQSTALNTIAQRLQAYRAGLTDPQKPVGVFLLVGPTGVGKTETAYALADALYGGERN
LISINLSEYQEAHTVSQLKGAPPGYVGYGSGGVLTEAVRRKPYSVVLLDEIEKAHPDVLEAFYNVFDKGLMEDGTGLVVD
FKNTVMLATSNVGAELLLDTPTAQLGSEAFNEALHKVLLQAFRPAFLARMTVVAYRPLDEQTLEGIVLAKLEKLRGRYKA
ATGKQFEFDSGIVKAVLAKCSAAGARDVENVLMTQVTGKLAEWVLE

Specific function: Required for secretion of hcp1 probably by providing the energy source for its translocation [H]

COG id: COG0542

COG function: function code O; ATPases with chaperone activity, ATP-binding subunit

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the clpA/clpB family [H]

Homologues:

Organism=Homo sapiens, GI13540606, Length=298, Percent_Identity=29.8657718120805, Blast_Score=135, Evalue=1e-31,
Organism=Escherichia coli, GI1788943, Length=858, Percent_Identity=38.9277389277389, Blast_Score=526, Evalue=1e-150,
Organism=Escherichia coli, GI1787109, Length=422, Percent_Identity=36.4928909952607, Blast_Score=243, Evalue=5e-65,
Organism=Saccharomyces cerevisiae, GI6320464, Length=636, Percent_Identity=40.4088050314465, Blast_Score=451, Evalue=1e-127,
Organism=Saccharomyces cerevisiae, GI6323002, Length=732, Percent_Identity=35.655737704918, Blast_Score=426, Evalue=1e-120,

Paralogues:

None

Copy number: 560 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR013093
- InterPro:   IPR003959
- InterPro:   IPR017729
- InterPro:   IPR018368
- InterPro:   IPR001270
- InterPro:   IPR019489
- InterPro:   IPR023150 [H]

Pfam domain/function: PF00004 AAA; PF07724 AAA_2; PF10431 ClpB_D2-small [H]

EC number: NA

Molecular weight: Translated: 92323; Mature: 92323

Theoretical pI: Translated: 5.60; Mature: 5.60

Prosite motif: PS00870 CLPAB_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELASLIGRLNPDNRRALERAAQRCLQRGHHFVEIEHLLLELLDIEGGDFAFLLPRFGLE
CCHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHCCCCCEEEECCCCCCC
RDALTAEINKALDLFKTGSTRTPALSSHTLGLLEDAVVQASVLGIDSIRSGLLLLALIDR
HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
DERRSLLLNSASSLLRIPKEALRANLLEWTENSREHVGPRSVSSGSPTPRQDSVLDQYTQ
CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCHHHHHHHHH
DLTADAHAGRIDPIVGRDGEIRQCIDILLRRRQNNPILVGAPGVGKTAVVEGLALRIAAG
HHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHEEEECC
DVPPSLQEVSLRVLDLGLLQAGAGVKGEFEQRLKGVIDTVRSADKPIILFIDEAHTLIGA
CCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEC
GGTEGGSDAANLLKPALARGELRTLAATTWMEYKKYFEKDPALARRFQLVQVEEPDEITA
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHEEEEEECCCCCHHH
VEMLRGVAAKLEQHHGVQVLDAAIHEAVKLSHRYISGRQLPDKAISVLDTACARVALGQH
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCC
DVPPPLESLRHRQQSLKEEVERLRREQATGLDHRERITLLESESKTNVQAIRELETRWSE
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHEEEECCCCCHHHHHHHHHHHHHHH
ERVAVRELLDTRRELLALSESADSDKPDEAIDSRIDHLAAELLRLEAGLDAIRQDDPLVP
HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
EQVDGKTVAAVIAGWTGIPVGKMLADEAHAVRTLGTRMGQRVMGQSTALNTIAQRLQAYR
CCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
AGLTDPQKPVGVFLLVGPTGVGKTETAYALADALYGGERNLISINLSEYQEAHTVSQLKG
CCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCC
APPGYVGYGSGGVLTEAVRRKPYSVVLLDEIEKAHPDVLEAFYNVFDKGLMEDGTGLVVD
CCCCEECCCCCCHHHHHHHCCCCEEEEHHHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEE
FKNTVMLATSNVGAELLLDTPTAQLGSEAFNEALHKVLLQAFRPAFLARMTVVAYRPLDE
ECCEEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
QTLEGIVLAKLEKLRGRYKAATGKQFEFDSGIVKAVLAKCSAAGARDVENVLMTQVTGKL
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
AEWVLE
HHHHCC
>Mature Secondary Structure
MELASLIGRLNPDNRRALERAAQRCLQRGHHFVEIEHLLLELLDIEGGDFAFLLPRFGLE
CCHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHCCCCCEEEECCCCCCC
RDALTAEINKALDLFKTGSTRTPALSSHTLGLLEDAVVQASVLGIDSIRSGLLLLALIDR
HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
DERRSLLLNSASSLLRIPKEALRANLLEWTENSREHVGPRSVSSGSPTPRQDSVLDQYTQ
CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCHHHHHHHHH
DLTADAHAGRIDPIVGRDGEIRQCIDILLRRRQNNPILVGAPGVGKTAVVEGLALRIAAG
HHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHEEEECC
DVPPSLQEVSLRVLDLGLLQAGAGVKGEFEQRLKGVIDTVRSADKPIILFIDEAHTLIGA
CCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEC
GGTEGGSDAANLLKPALARGELRTLAATTWMEYKKYFEKDPALARRFQLVQVEEPDEITA
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHEEEEEECCCCCHHH
VEMLRGVAAKLEQHHGVQVLDAAIHEAVKLSHRYISGRQLPDKAISVLDTACARVALGQH
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCC
DVPPPLESLRHRQQSLKEEVERLRREQATGLDHRERITLLESESKTNVQAIRELETRWSE
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHEEEECCCCCHHHHHHHHHHHHHHH
ERVAVRELLDTRRELLALSESADSDKPDEAIDSRIDHLAAELLRLEAGLDAIRQDDPLVP
HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
EQVDGKTVAAVIAGWTGIPVGKMLADEAHAVRTLGTRMGQRVMGQSTALNTIAQRLQAYR
CCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
AGLTDPQKPVGVFLLVGPTGVGKTETAYALADALYGGERNLISINLSEYQEAHTVSQLKG
CCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCC
APPGYVGYGSGGVLTEAVRRKPYSVVLLDEIEKAHPDVLEAFYNVFDKGLMEDGTGLVVD
CCCCEECCCCCCHHHHHHHCCCCEEEEHHHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEE
FKNTVMLATSNVGAELLLDTPTAQLGSEAFNEALHKVLLQAFRPAFLARMTVVAYRPLDE
ECCEEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
QTLEGIVLAKLEKLRGRYKAATGKQFEFDSGIVKAVLAKCSAAGARDVENVLMTQVTGKL
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
AEWVLE
HHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on peptide bonds (Peptidases); Serine endopeptidases [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]