| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is rstB [H]
Identifier: 77459612
GI number: 77459612
Start: 3866698
End: 3867984
Strand: Reverse
Name: rstB [H]
Synonym: Pfl01_3390
Alternate gene names: 77459612
Gene position: 3867984-3866698 (Counterclockwise)
Preceding gene: 77459613
Following gene: 77459609
Centisome position: 60.08
GC content: 64.18
Gene sequence:
>1287_bases ATGCTGCGGTTATTTCTCGGGCTGTTTCTGGTGATGACCGTCGGGCTGGTGGCGGCGCTGCAAACCGTCGAACACACCTT CAACGCGTTGCTCGACAACCAGATGCAGGCCTACAACCGCGAGGCGGTGCGCGGTCAGGCCTGGTCGCTGATCGAACACA TGCGCGACCAGCAGGGCGCGGCGCGCGAGGCCCAACTGGAGGCGTTGCGGCCGCACTACGGGTTGACGCTGAGCCTGGTC GAGGCTGACCAATTGAACCTCAACGATCAGGAAAAAGCCGAACTGGCCCAGGATCTGCTGGTGATTCGCGATGACTACAC CCAGTTCATCAGCAACATCGACGGTGGTTCGCAGTTGCTCAGCATCAAATTGCCGCCCGAGCCGAGCCTGATGCCGTTCT ACATTGCCGGGGCCTACCTGATGCTGGCCGTGTTGCTCGGCATCGTCCTGTACTTCTGGGTGCGCCCGCACTGGCGCGAT CTGGAAAAACTGCGGCTGGCCGCCGAGCGTTTCGGTGACAACGACCTTTCGGTGCGGATCCAGCTGTCCAAGCGCTCGAA CATCCGCGACCTGGCCGGCCACTTCAACCTGATGGCGGCGCGCATCGAAGGCCTGATCGCCAATCAGCGCGAACTGACCA ACGCGGTCTCCCACGAACTGCGCACGCCGATTGCCCGGTTGTCGTTCGAGCTCGATCAGCTCAAGCAGCAACCGGACGCC AGCCAGAACCGCGAACTGATCGCCGACATGTACGCCGACCTCGGCGAGCTGGAAGAAATGGTCTCCGAACTGCTGACCTA CGCCAGCCTCGAGCGCGGCGCGACGGTGATCACCCGCGAAAACATTCAGGCTGCCAACTGGCTCGACAGCGTGGTCGGCA GCGTGGCGCTGGAAGCCGAGGCGGCCGGGGTGCAGCTGTTGATCGTAGATTGCCGGGTCGACGAAGTGCGGATCGAACCG CGTTTCATGGCGCGTGCGGTGATCAATCTGCTGCGCAATGCCATCCGGTATGCCGAGCAGCGGGTCGAGGTGTCGCTGGT GCGCGTTGGCGATCAATACGAAGTGCAGGTCAACGACGACGGGCCGGGTGTGCCGCTGGCAGGGCGGGAGAAAATCTTCG AACCGTTCTCGCGTCTGGACGCCAGCCGTGACCGCCGCACGGGCGGCTTCGGCCTCGGCCTGGCGCTGGTGCGGCGGGTG TCGCAATCCCATGGCGGGCAGGTCGAGGTCGGCGACTCGCCGTGGGGCGGCGCTTCGTTCCGCATGACCTGGGCGCATCT GGATTGA
Upstream 100 bases:
>100_bases ATTGCGCAACAAACTCAAGGACAACCCTCGCGAACCGGTGTGCATCAAGACCGTGTGGGGCAAGGGTTACCTGTTCAATC CGTTTGCGTGGGAGTTGTAG
Downstream 100 bases:
>100_bases TGAGTCTCCCTCCCCGGAAGGGAAGGCAGTCGATTAACTGAGGACGTAGTCCACCGGTTTCAGCGCTGGCGGCAACGGTT CAGTCCCCAGCTCCGAGAGA
Product: periplasmic sensor Signal transduction histidine kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 428; Mature: 428
Protein sequence:
>428_residues MLRLFLGLFLVMTVGLVAALQTVEHTFNALLDNQMQAYNREAVRGQAWSLIEHMRDQQGAAREAQLEALRPHYGLTLSLV EADQLNLNDQEKAELAQDLLVIRDDYTQFISNIDGGSQLLSIKLPPEPSLMPFYIAGAYLMLAVLLGIVLYFWVRPHWRD LEKLRLAAERFGDNDLSVRIQLSKRSNIRDLAGHFNLMAARIEGLIANQRELTNAVSHELRTPIARLSFELDQLKQQPDA SQNRELIADMYADLGELEEMVSELLTYASLERGATVITRENIQAANWLDSVVGSVALEAEAAGVQLLIVDCRVDEVRIEP RFMARAVINLLRNAIRYAEQRVEVSLVRVGDQYEVQVNDDGPGVPLAGREKIFEPFSRLDASRDRRTGGFGLGLALVRRV SQSHGGQVEVGDSPWGGASFRMTWAHLD
Sequences:
>Translated_428_residues MLRLFLGLFLVMTVGLVAALQTVEHTFNALLDNQMQAYNREAVRGQAWSLIEHMRDQQGAAREAQLEALRPHYGLTLSLV EADQLNLNDQEKAELAQDLLVIRDDYTQFISNIDGGSQLLSIKLPPEPSLMPFYIAGAYLMLAVLLGIVLYFWVRPHWRD LEKLRLAAERFGDNDLSVRIQLSKRSNIRDLAGHFNLMAARIEGLIANQRELTNAVSHELRTPIARLSFELDQLKQQPDA SQNRELIADMYADLGELEEMVSELLTYASLERGATVITRENIQAANWLDSVVGSVALEAEAAGVQLLIVDCRVDEVRIEP RFMARAVINLLRNAIRYAEQRVEVSLVRVGDQYEVQVNDDGPGVPLAGREKIFEPFSRLDASRDRRTGGFGLGLALVRRV SQSHGGQVEVGDSPWGGASFRMTWAHLD >Mature_428_residues MLRLFLGLFLVMTVGLVAALQTVEHTFNALLDNQMQAYNREAVRGQAWSLIEHMRDQQGAAREAQLEALRPHYGLTLSLV EADQLNLNDQEKAELAQDLLVIRDDYTQFISNIDGGSQLLSIKLPPEPSLMPFYIAGAYLMLAVLLGIVLYFWVRPHWRD LEKLRLAAERFGDNDLSVRIQLSKRSNIRDLAGHFNLMAARIEGLIANQRELTNAVSHELRTPIARLSFELDQLKQQPDA SQNRELIADMYADLGELEEMVSELLTYASLERGATVITRENIQAANWLDSVVGSVALEAEAAGVQLLIVDCRVDEVRIEP RFMARAVINLLRNAIRYAEQRVEVSLVRVGDQYEVQVNDDGPGVPLAGREKIFEPFSRLDASRDRRTGGFGLGLALVRRV SQSHGGQVEVGDSPWGGASFRMTWAHLD
Specific function: Member of the two-component regulatory system rstB/rstA. RstB functions as a membrane-associated protein kinase that phosphorylates rstA (Potential) [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 histidine kinase domain [H]
Homologues:
Organism=Escherichia coli, GI1787894, Length=433, Percent_Identity=33.256351039261, Blast_Score=201, Evalue=6e-53, Organism=Escherichia coli, GI1790346, Length=257, Percent_Identity=33.852140077821, Blast_Score=129, Evalue=3e-31, Organism=Escherichia coli, GI1789808, Length=287, Percent_Identity=30.3135888501742, Blast_Score=106, Evalue=3e-24, Organism=Escherichia coli, GI1786783, Length=290, Percent_Identity=28.6206896551724, Blast_Score=97, Evalue=3e-21, Organism=Escherichia coli, GI1788393, Length=261, Percent_Identity=26.4367816091954, Blast_Score=94, Evalue=2e-20, Organism=Escherichia coli, GI1789149, Length=248, Percent_Identity=29.0322580645161, Blast_Score=89, Evalue=4e-19, Organism=Escherichia coli, GI1786912, Length=240, Percent_Identity=29.1666666666667, Blast_Score=89, Evalue=8e-19, Organism=Escherichia coli, GI1787374, Length=284, Percent_Identity=27.4647887323944, Blast_Score=88, Evalue=1e-18, Organism=Escherichia coli, GI1789403, Length=241, Percent_Identity=27.3858921161826, Blast_Score=81, Evalue=1e-16, Organism=Escherichia coli, GI1786600, Length=237, Percent_Identity=28.2700421940928, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI87081816, Length=328, Percent_Identity=25.3048780487805, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1790551, Length=280, Percent_Identity=27.8571428571429, Blast_Score=78, Evalue=9e-16, Organism=Escherichia coli, GI87082128, Length=259, Percent_Identity=23.9382239382239, Blast_Score=76, Evalue=4e-15, Organism=Escherichia coli, GI1788549, Length=220, Percent_Identity=24.5454545454545, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1790861, Length=289, Percent_Identity=28.719723183391, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI145693157, Length=215, Percent_Identity=27.906976744186, Blast_Score=70, Evalue=3e-13, Organism=Escherichia coli, GI1788713, Length=231, Percent_Identity=23.3766233766234, Blast_Score=64, Evalue=2e-11, Organism=Escherichia coli, GI1788279, Length=266, Percent_Identity=22.5563909774436, Blast_Score=64, Evalue=2e-11, Organism=Escherichia coli, GI1790436, Length=216, Percent_Identity=23.6111111111111, Blast_Score=64, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR003660 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 [H]
Pfam domain/function: PF00672 HAMP; PF02518 HATPase_c; PF00512 HisKA [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 47985; Mature: 47985
Theoretical pI: Translated: 4.87; Mature: 4.87
Prosite motif: PS50885 HAMP ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLRLFLGLFLVMTVGLVAALQTVEHTFNALLDNQMQAYNREAVRGQAWSLIEHMRDQQGA CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC AREAQLEALRPHYGLTLSLVEADQLNLNDQEKAELAQDLLVIRDDYTQFISNIDGGSQLL HHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE SIKLPPEPSLMPFYIAGAYLMLAVLLGIVLYFWVRPHWRDLEKLRLAAERFGDNDLSVRI EEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEE QLSKRSNIRDLAGHFNLMAARIEGLIANQRELTNAVSHELRTPIARLSFELDQLKQQPDA EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCC SQNRELIADMYADLGELEEMVSELLTYASLERGATVITRENIQAANWLDSVVGSVALEAE CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHH AAGVQLLIVDCRVDEVRIEPRFMARAVINLLRNAIRYAEQRVEVSLVRVGDQYEVQVNDD CCCEEEEEEEECCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCEEEEEECCC GPGVPLAGREKIFEPFSRLDASRDRRTGGFGLGLALVRRVSQSHGGQVEVGDSPWGGASF CCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCE RMTWAHLD EEEEEECC >Mature Secondary Structure MLRLFLGLFLVMTVGLVAALQTVEHTFNALLDNQMQAYNREAVRGQAWSLIEHMRDQQGA CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC AREAQLEALRPHYGLTLSLVEADQLNLNDQEKAELAQDLLVIRDDYTQFISNIDGGSQLL HHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE SIKLPPEPSLMPFYIAGAYLMLAVLLGIVLYFWVRPHWRDLEKLRLAAERFGDNDLSVRI EEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEE QLSKRSNIRDLAGHFNLMAARIEGLIANQRELTNAVSHELRTPIARLSFELDQLKQQPDA EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCC SQNRELIADMYADLGELEEMVSELLTYASLERGATVITRENIQAANWLDSVVGSVALEAE CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHH AAGVQLLIVDCRVDEVRIEPRFMARAVINLLRNAIRYAEQRVEVSLVRVGDQYEVQVNDD CCCEEEEEEEECCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCEEEEEECCC GPGVPLAGREKIFEPFSRLDASRDRRTGGFGLGLALVRRVSQSHGGQVEVGDSPWGGASF CCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCE RMTWAHLD EEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9097039; 9278503; 2646639; 1925016; 1495392 [H]