| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is 77459578
Identifier: 77459578
GI number: 77459578
Start: 3830182
End: 3831444
Strand: Reverse
Name: 77459578
Synonym: Pfl01_3356
Alternate gene names: NA
Gene position: 3831444-3830182 (Counterclockwise)
Preceding gene: 77459579
Following gene: 77459570
Centisome position: 59.51
GC content: 63.34
Gene sequence:
>1263_bases GTGGCCACTCACCTCGATCGCCGTAATAACCTGTCTCTCGACAGCCTGAATTTTTTCCTCGCCGACGTGCGTGACGGCCT GGGGCCCTATTTGGCGATTTACCTGCTGGCGGTTCACCACTGGGAGCCGGCGAGCATCGGTCTGGTGATGACCATAGCCG GGATCGCCGCACTGATCACGCAGACCCCGGCAGGTGCGCTGGTCGACAGCACGCGCTTCAAACGGTCGCTCATTGCGGTT GCCGCGCTGGTGGTCACCGCAAGCTGTCTGCTGCTGCCGTTTGTGACGTCGTTCAGTCTGGTGGCCCTGACGCAGGCGAT CAGTGCCGCTGCCGCTTCGATCTTCGCGCCCGCCATTTGCGCGATCACCCTGGGTATCACCGGGCCGCGAGCCTTCACGC GAAGGACCGGGCGCAACGAAACCTTCAACCATGCCGGCAACGCCTGCGCCGCGTTGTTGGCCGGTTTGTCCGCGTACCTG TTTGGTCCGGTTGCGGTGTTTTATTTGATGGCGGTCATGGCGCTGGCCAGTGTGATTGCCGTTTCGTTCGTATCGGCCGA CGCCATTGATCACGATCTCGCCCGGGGTCTGGAGCCCAGCGCAACGGGGCAGGGCAAGCAGCCTTCGGGCTTTTCCGTGT TGCTCACCAACAGGCCGCTGCTGATGTTCGCGATTTGTTGTGCGCTGTTTCATCTGGCGAACGCGGCGATGTTGCCGCTG GTGAGTCAGAAACTGGCGCAGGCCAATCTGCAGATGGCCACGCCACTCACGTCCGCCTGCATCGTCGCGGCACAACTGGT GATGGTGCCGGTCGCGCTGCTGGTGGGGGCGAAGGCCGATCTGTGGGGGCGCAAGCCGTTGCTGCTGGCGGGGTTTATGA TCCTGCCATTGCGCGGTGTGCTGTATGTGCTGTCGAACGATCCGTGGTGGCTGGTTTCGGTGCAGTTGCTCGATGGCATC GGCGCGGGGATTTTCGGCGCGCTGTTTCCGGTGGTGGTGAAAGACCTGACGCTGGGCACCGGACATTTCAATGTCAGTCT CGGGGCGATTTCAACGGTGTTCGGTCTGGGCGCGGCATTGAGCAACAGCCTGGCGGGGATTGTGGTTCAGGAGGCCGGTT ACAGCGCTGCGTTCCTGACCCTGGCGGCGGTGGCAATGGCGGCGCTGGTGCTGCTCTGGTTGGCAGTGCCGGAGACGGTG CAGCGCTCCGATACCGACTCGATCGCCCTGCAAGGCAAGGCGCCGCCGATGGTTGCGCCATGA
Upstream 100 bases:
>100_bases AAAGACGGCTGTTTCATGCAACTAAAACGCTTGGCAAAAGGTCATTCGATTTGCGGAGGTTGAGTCATCTCGCAGAACCT CGACAACGAAGACGTTACCC
Downstream 100 bases:
>100_bases CTCAACGCTCGCAAGACCTGTTCAACCGGCGGGAATCGACAACGTCGCCCGCAGGCCGCCCTCGACCCGGTTTTCCAGTG TGATCCGCCCACCCAGACGG
Product: major facilitator transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 420; Mature: 419
Protein sequence:
>420_residues MATHLDRRNNLSLDSLNFFLADVRDGLGPYLAIYLLAVHHWEPASIGLVMTIAGIAALITQTPAGALVDSTRFKRSLIAV AALVVTASCLLLPFVTSFSLVALTQAISAAAASIFAPAICAITLGITGPRAFTRRTGRNETFNHAGNACAALLAGLSAYL FGPVAVFYLMAVMALASVIAVSFVSADAIDHDLARGLEPSATGQGKQPSGFSVLLTNRPLLMFAICCALFHLANAAMLPL VSQKLAQANLQMATPLTSACIVAAQLVMVPVALLVGAKADLWGRKPLLLAGFMILPLRGVLYVLSNDPWWLVSVQLLDGI GAGIFGALFPVVVKDLTLGTGHFNVSLGAISTVFGLGAALSNSLAGIVVQEAGYSAAFLTLAAVAMAALVLLWLAVPETV QRSDTDSIALQGKAPPMVAP
Sequences:
>Translated_420_residues MATHLDRRNNLSLDSLNFFLADVRDGLGPYLAIYLLAVHHWEPASIGLVMTIAGIAALITQTPAGALVDSTRFKRSLIAV AALVVTASCLLLPFVTSFSLVALTQAISAAAASIFAPAICAITLGITGPRAFTRRTGRNETFNHAGNACAALLAGLSAYL FGPVAVFYLMAVMALASVIAVSFVSADAIDHDLARGLEPSATGQGKQPSGFSVLLTNRPLLMFAICCALFHLANAAMLPL VSQKLAQANLQMATPLTSACIVAAQLVMVPVALLVGAKADLWGRKPLLLAGFMILPLRGVLYVLSNDPWWLVSVQLLDGI GAGIFGALFPVVVKDLTLGTGHFNVSLGAISTVFGLGAALSNSLAGIVVQEAGYSAAFLTLAAVAMAALVLLWLAVPETV QRSDTDSIALQGKAPPMVAP >Mature_419_residues ATHLDRRNNLSLDSLNFFLADVRDGLGPYLAIYLLAVHHWEPASIGLVMTIAGIAALITQTPAGALVDSTRFKRSLIAVA ALVVTASCLLLPFVTSFSLVALTQAISAAAASIFAPAICAITLGITGPRAFTRRTGRNETFNHAGNACAALLAGLSAYLF GPVAVFYLMAVMALASVIAVSFVSADAIDHDLARGLEPSATGQGKQPSGFSVLLTNRPLLMFAICCALFHLANAAMLPLV SQKLAQANLQMATPLTSACIVAAQLVMVPVALLVGAKADLWGRKPLLLAGFMILPLRGVLYVLSNDPWWLVSVQLLDGIG AGIFGALFPVVVKDLTLGTGHFNVSLGAISTVFGLGAALSNSLAGIVVQEAGYSAAFLTLAAVAMAALVLLWLAVPETVQ RSDTDSIALQGKAPPMVAP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 43556; Mature: 43425
Theoretical pI: Translated: 8.14; Mature: 8.14
Prosite motif: PS50850 MFS ; PS00216 SUGAR_TRANSPORT_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATHLDRRNNLSLDSLNFFLADVRDGLGPYLAIYLLAVHHWEPASIGLVMTIAGIAALIT CCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH QTPAGALVDSTRFKRSLIAVAALVVTASCLLLPFVTSFSLVALTQAISAAAASIFAPAIC CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AITLGITGPRAFTRRTGRNETFNHAGNACAALLAGLSAYLFGPVAVFYLMAVMALASVIA HHHCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VSFVSADAIDHDLARGLEPSATGQGKQPSGFSVLLTNRPLLMFAICCALFHLANAAMLPL HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHH VSQKLAQANLQMATPLTSACIVAAQLVMVPVALLVGAKADLWGRKPLLLAGFMILPLRGV HHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH LYVLSNDPWWLVSVQLLDGIGAGIFGALFPVVVKDLTLGTGHFNVSLGAISTVFGLGAAL EEEECCCCEEEEEHHHHHCCCHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHH SNSLAGIVVQEAGYSAAFLTLAAVAMAALVLLWLAVPETVQRSDTDSIALQGKAPPMVAP HCCHHEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCEEEECCCCCCCCC >Mature Secondary Structure ATHLDRRNNLSLDSLNFFLADVRDGLGPYLAIYLLAVHHWEPASIGLVMTIAGIAALIT CCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH QTPAGALVDSTRFKRSLIAVAALVVTASCLLLPFVTSFSLVALTQAISAAAASIFAPAIC CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AITLGITGPRAFTRRTGRNETFNHAGNACAALLAGLSAYLFGPVAVFYLMAVMALASVIA HHHCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VSFVSADAIDHDLARGLEPSATGQGKQPSGFSVLLTNRPLLMFAICCALFHLANAAMLPL HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHH VSQKLAQANLQMATPLTSACIVAAQLVMVPVALLVGAKADLWGRKPLLLAGFMILPLRGV HHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH LYVLSNDPWWLVSVQLLDGIGAGIFGALFPVVVKDLTLGTGHFNVSLGAISTVFGLGAAL EEEECCCCEEEEEHHHHHCCCHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHH SNSLAGIVVQEAGYSAAFLTLAAVAMAALVLLWLAVPETVQRSDTDSIALQGKAPPMVAP HCCHHEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCEEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]