| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is fct [H]
Identifier: 77459540
GI number: 77459540
Start: 3797732
End: 3799864
Strand: Direct
Name: fct [H]
Synonym: Pfl01_3318
Alternate gene names: 77459540
Gene position: 3797732-3799864 (Clockwise)
Preceding gene: 77459539
Following gene: 77459545
Centisome position: 58.99
GC content: 61.23
Gene sequence:
>2133_bases ATGAAACAACTTACCTTGCTGGCGAGCCTGTGCGGCTGCCTGTCCGTCAACGTCTGGGCGCAATCCACCGTGGATCTGGC GCCGATCACCATTGACGGCGAGTCCGGTGCCGAGCCTGGCCTGAGCCTCGACCAGTCCAGCGGCATGGCCTCGCGCCTCG GCCTCAGCGTGCGCGACACTCCGGCTTCGGTGGCCATTGCCAACCGCAGTGACATCGAACGTCGCGGTTCGCAAAGCTTT CAGGACGCGGCCAACACCTTGCCGGGCGTGAACGCCAGTGCCCCGCCTGGCTTTGGCGGGTTCGTCTCCTATCGCGGTTT CACCAGCAGCCAGATCACCCAGATGTTCAACGGCGTCAACGTTTCCGGCGGGCTGGCGCGGCCAGTGGATTCATGGATTT ATGACCGGGTGGAACTGGTCGGCGGCCCGTCATCGTTGATCAACGGCGCGGGCTCGGTCGGTGGCTCGCTGAACTACGTG ACCAAACTGGCCACCCGCGACGAGCAAGCCATCGAAGGCCGGGTCAGCTATGGCACCTACGACACCACCGAAACCGCGTT CGGCCTCAATCACGCGCTGACCGAACCCGGCGTCGACGCGCAGCATTACGCGCGCCTCGACGTCAGCCACAACACCAGCA ACGGCTACATCGACCGGCAGGAACGCGATGCCTGGAGCGTGGCGTTCTCGCTGCTCAGCGATCTGACGCCGAACCTGTCG CACACCCTGGCCCTGGAATATCAGGACGAACACGAAGACAGCCCGTACTGGGGCACGCCGGTGCTCAACCCCAAGGCCGG CGAGTTGAAGATCGACAAGCACAACCGCTTCAACAACTACAACGTCGAGGACGGCCGGTACGAGCAGCGGACGATCTGGG TGCGCTCGATCATCGATTACCGGATCAACGACAGCACCACCCTGCGCAACACCCTCTATCACCTCGACAGCCAGCGTGAT TACCGCAACCTGGAAACCTATCAATACAACGCCGACAACAGCGCGGTGAACCGCTCCACTGCGTATCAGGTGCGACATCA GGGCGAGCAGAACGGCAACCAATTCGAACTGCGCCACGACAACACCCTGTTCGGCCTCGACACCACCTGGTCCGGCGGAT TCGAGTACAAGGTCAACCAGACCACCAACTCGCCGCTGAACGTCAAAGGCGCCAGCGCGGTGAACCCGAACAACTACCGA CCGGGGCATTTCTATGACATCCCCGGAACGATGCCGGGTTTTGTCAGCGACAAGACCAACGAAGTCACCACCAAAGCGCT GTTTGCCGAGAATCGCCTGGCACTGACCGACAAGCTTTCGCTGCTCACTGGTCTGCGCTATGACGACATCGACCTCGACG TGACCAACCATCGCACGGTAACGGCAAGCAACCCGCATCATCTGAAGCGCAGCTGGGATCCGGTCACCGGGCGCATCGGC CTGACCTATCAGTTCATTCCGTCAGCCAATGTATACGTGCAATACAGCACTGCCGCCGAGCAACCCAATGGCACCCAGGA CTTTGATGTCTCGACCGGCAAGCAATGGGAAATCGGCAGCAAGTTCGACTACCTGAACGGACGCGGTTCGGCAACGGTGG CCGCCTACACCATCGAGCGCAAGGACTTCGCGGTGACGGATCCACTGGACCCGACCAGCAGCATTCCGGTCGGCCAGCAG ACGTCGAAGGGTATCGAGATTGCCAGCTCGTTGCGGATCACCGACAAGTTGCTGGCCGAAGGCAACTTCGCCTGGGTCGA TGCGCAATACGATGAGTTCAACGAAAAGAACCCCGCCGGCGTGGTGGTTTCGCGCAAGGGCAACACACCGACCAACGTGC CGGACCGGGTCGGCAATCTGTGGCTGACCTACGATTTCTCGCCAAAATGGCAAGGCGGGGTCGATGCGCGGTACGTGGCG TCGGTGTTCGCCGATAATGCCAACACCATGACCGTGCCGTCGTACACGCTGTTTGGCAGCTTTCTCAGCTACAAGGTGGA TTCGCACACCACTGTGACCGGACGGGTGCGCAACCTGACGAATGAGGTGTATGCCGAGTTCGCCCATGTGTCGCCGGCGT ATTACCTCGGCACACCGCGTACATTCGAGCTGGCTGTACAGACGCGGTTCTGA
Upstream 100 bases:
>100_bases GCCTGAGTGCCCTTGCCTTTTTGATCTGTCAGCCCACTGCGCCAACGCGCGGCGTTCGCCTGTGCGCTGACTCCGAGAAC AAGCATTCAGGATTCAATCA
Downstream 100 bases:
>100_bases TTCATCCTGGCGAGGGCGTCGCCCCTCGCCACTTCACTACAGACCTGCCTGAACCTTCTGCGCCACATCCTTCGGCAGCC ACGCCTGCCACACATCCGGG
Product: TonB-dependent siderophore receptor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 710; Mature: 710
Protein sequence:
>710_residues MKQLTLLASLCGCLSVNVWAQSTVDLAPITIDGESGAEPGLSLDQSSGMASRLGLSVRDTPASVAIANRSDIERRGSQSF QDAANTLPGVNASAPPGFGGFVSYRGFTSSQITQMFNGVNVSGGLARPVDSWIYDRVELVGGPSSLINGAGSVGGSLNYV TKLATRDEQAIEGRVSYGTYDTTETAFGLNHALTEPGVDAQHYARLDVSHNTSNGYIDRQERDAWSVAFSLLSDLTPNLS HTLALEYQDEHEDSPYWGTPVLNPKAGELKIDKHNRFNNYNVEDGRYEQRTIWVRSIIDYRINDSTTLRNTLYHLDSQRD YRNLETYQYNADNSAVNRSTAYQVRHQGEQNGNQFELRHDNTLFGLDTTWSGGFEYKVNQTTNSPLNVKGASAVNPNNYR PGHFYDIPGTMPGFVSDKTNEVTTKALFAENRLALTDKLSLLTGLRYDDIDLDVTNHRTVTASNPHHLKRSWDPVTGRIG LTYQFIPSANVYVQYSTAAEQPNGTQDFDVSTGKQWEIGSKFDYLNGRGSATVAAYTIERKDFAVTDPLDPTSSIPVGQQ TSKGIEIASSLRITDKLLAEGNFAWVDAQYDEFNEKNPAGVVVSRKGNTPTNVPDRVGNLWLTYDFSPKWQGGVDARYVA SVFADNANTMTVPSYTLFGSFLSYKVDSHTTVTGRVRNLTNEVYAEFAHVSPAYYLGTPRTFELAVQTRF
Sequences:
>Translated_710_residues MKQLTLLASLCGCLSVNVWAQSTVDLAPITIDGESGAEPGLSLDQSSGMASRLGLSVRDTPASVAIANRSDIERRGSQSF QDAANTLPGVNASAPPGFGGFVSYRGFTSSQITQMFNGVNVSGGLARPVDSWIYDRVELVGGPSSLINGAGSVGGSLNYV TKLATRDEQAIEGRVSYGTYDTTETAFGLNHALTEPGVDAQHYARLDVSHNTSNGYIDRQERDAWSVAFSLLSDLTPNLS HTLALEYQDEHEDSPYWGTPVLNPKAGELKIDKHNRFNNYNVEDGRYEQRTIWVRSIIDYRINDSTTLRNTLYHLDSQRD YRNLETYQYNADNSAVNRSTAYQVRHQGEQNGNQFELRHDNTLFGLDTTWSGGFEYKVNQTTNSPLNVKGASAVNPNNYR PGHFYDIPGTMPGFVSDKTNEVTTKALFAENRLALTDKLSLLTGLRYDDIDLDVTNHRTVTASNPHHLKRSWDPVTGRIG LTYQFIPSANVYVQYSTAAEQPNGTQDFDVSTGKQWEIGSKFDYLNGRGSATVAAYTIERKDFAVTDPLDPTSSIPVGQQ TSKGIEIASSLRITDKLLAEGNFAWVDAQYDEFNEKNPAGVVVSRKGNTPTNVPDRVGNLWLTYDFSPKWQGGVDARYVA SVFADNANTMTVPSYTLFGSFLSYKVDSHTTVTGRVRNLTNEVYAEFAHVSPAYYLGTPRTFELAVQTRF >Mature_710_residues MKQLTLLASLCGCLSVNVWAQSTVDLAPITIDGESGAEPGLSLDQSSGMASRLGLSVRDTPASVAIANRSDIERRGSQSF QDAANTLPGVNASAPPGFGGFVSYRGFTSSQITQMFNGVNVSGGLARPVDSWIYDRVELVGGPSSLINGAGSVGGSLNYV TKLATRDEQAIEGRVSYGTYDTTETAFGLNHALTEPGVDAQHYARLDVSHNTSNGYIDRQERDAWSVAFSLLSDLTPNLS HTLALEYQDEHEDSPYWGTPVLNPKAGELKIDKHNRFNNYNVEDGRYEQRTIWVRSIIDYRINDSTTLRNTLYHLDSQRD YRNLETYQYNADNSAVNRSTAYQVRHQGEQNGNQFELRHDNTLFGLDTTWSGGFEYKVNQTTNSPLNVKGASAVNPNNYR PGHFYDIPGTMPGFVSDKTNEVTTKALFAENRLALTDKLSLLTGLRYDDIDLDVTNHRTVTASNPHHLKRSWDPVTGRIG LTYQFIPSANVYVQYSTAAEQPNGTQDFDVSTGKQWEIGSKFDYLNGRGSATVAAYTIERKDFAVTDPLDPTSSIPVGQQ TSKGIEIASSLRITDKLLAEGNFAWVDAQYDEFNEKNPAGVVVSRKGNTPTNVPDRVGNLWLTYDFSPKWQGGVDARYVA SVFADNANTMTVPSYTLFGSFLSYKVDSHTTVTGRVRNLTNEVYAEFAHVSPAYYLGTPRTFELAVQTRF
Specific function: Involved in the initial step of iron uptake by binding chrysobactin, an iron chelatin siderophore that allows the bacteria to extract iron from the environment [H]
COG id: COG1629
COG function: function code P; Outer membrane receptor proteins, mostly Fe transport
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1787344, Length=768, Percent_Identity=24.21875, Blast_Score=97, Evalue=3e-21, Organism=Escherichia coli, GI1786344, Length=734, Percent_Identity=22.8882833787466, Blast_Score=96, Evalue=6e-21, Organism=Escherichia coli, GI1787723, Length=342, Percent_Identity=25.4385964912281, Blast_Score=80, Evalue=6e-16, Organism=Escherichia coli, GI1787024, Length=780, Percent_Identity=22.5641025641026, Blast_Score=79, Evalue=1e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010916 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 78280; Mature: 78280
Theoretical pI: Translated: 5.19; Mature: 5.19
Prosite motif: PS01156 TONB_DEPENDENT_REC_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 1.0 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKQLTLLASLCGCLSVNVWAQSTVDLAPITIDGESGAEPGLSLDQSSGMASRLGLSVRDT CCHHHHHHHHHHHHEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCCHHHHCCEECCC PASVAIANRSDIERRGSQSFQDAANTLPGVNASAPPGFGGFVSYRGFTSSQITQMFNGVN CCEEEEECCHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCEEECCCCHHHHHHHHCCCC VSGGLARPVDSWIYDRVELVGGPSSLINGAGSVGGSLNYVTKLATRDEQAIEGRVSYGTY CCCCCCCCHHHHHHHHHHCCCCCHHHHCCCCCCCCCHHHHHHHHCCCCHHHCCEEEECCC DTTETAFGLNHALTEPGVDAQHYARLDVSHNTSNGYIDRQERDAWSVAFSLLSDLTPNLS CCCHHHCCCHHHCCCCCCCHHHEEEEEECCCCCCCEEECCHHHHHHHHHHHHHHCCCCCC HTLALEYQDEHEDSPYWGTPVLNPKAGELKIDKHNRFNNYNVEDGRYEQRTIWVRSIIDY EEEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHEEEEHHHHE RINDSTTLRNTLYHLDSQRDYRNLETYQYNADNSAVNRSTAYQVRHQGEQNGNQFELRHD ECCCCHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHCCCCCCCEEEEEEC NTLFGLDTTWSGGFEYKVNQTTNSPLNVKGASAVNPNNYRPGHFYDIPGTMPGFVSDKTN CEEEEECCCCCCCEEEEEECCCCCCCEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCC EVTTKALFAENRLALTDKLSLLTGLRYDDIDLDVTNHRTVTASNPHHLKRSWDPVTGRIG CHHHHHHHHCCCEEHHHHHHHHHCCCCCCEEEEECCCEEEECCCCHHHCCCCCCCCCEEE LTYQFIPSANVYVQYSTAAEQPNGTQDFDVSTGKQWEIGSKFDYLNGRGSATVAAYTIER EEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEC KDFAVTDPLDPTSSIPVGQQTSKGIEIASSLRITDKLLAEGNFAWVDAQYDEFNEKNPAG CCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHCCCCCCCC VVVSRKGNTPTNVPDRVGNLWLTYDFSPKWQGGVDARYVASVFADNANTMTVPSYTLFGS EEEECCCCCCCCCCHHHCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCEEECCCHHHHHH FLSYKVDSHTTVTGRVRNLTNEVYAEFAHVSPAYYLGTPRTFELAVQTRF HHHEEECCCEEEEHHHHHHHHHHHHHHHHCCCEEEECCCCEEEEEEEECC >Mature Secondary Structure MKQLTLLASLCGCLSVNVWAQSTVDLAPITIDGESGAEPGLSLDQSSGMASRLGLSVRDT CCHHHHHHHHHHHHEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCCHHHHCCEECCC PASVAIANRSDIERRGSQSFQDAANTLPGVNASAPPGFGGFVSYRGFTSSQITQMFNGVN CCEEEEECCHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCEEECCCCHHHHHHHHCCCC VSGGLARPVDSWIYDRVELVGGPSSLINGAGSVGGSLNYVTKLATRDEQAIEGRVSYGTY CCCCCCCCHHHHHHHHHHCCCCCHHHHCCCCCCCCCHHHHHHHHCCCCHHHCCEEEECCC DTTETAFGLNHALTEPGVDAQHYARLDVSHNTSNGYIDRQERDAWSVAFSLLSDLTPNLS CCCHHHCCCHHHCCCCCCCHHHEEEEEECCCCCCCEEECCHHHHHHHHHHHHHHCCCCCC HTLALEYQDEHEDSPYWGTPVLNPKAGELKIDKHNRFNNYNVEDGRYEQRTIWVRSIIDY EEEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHEEEEHHHHE RINDSTTLRNTLYHLDSQRDYRNLETYQYNADNSAVNRSTAYQVRHQGEQNGNQFELRHD ECCCCHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHCCCCCCCEEEEEEC NTLFGLDTTWSGGFEYKVNQTTNSPLNVKGASAVNPNNYRPGHFYDIPGTMPGFVSDKTN CEEEEECCCCCCCEEEEEECCCCCCCEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCC EVTTKALFAENRLALTDKLSLLTGLRYDDIDLDVTNHRTVTASNPHHLKRSWDPVTGRIG CHHHHHHHHCCCEEHHHHHHHHHCCCCCCEEEEECCCEEEECCCCHHHCCCCCCCCCEEE LTYQFIPSANVYVQYSTAAEQPNGTQDFDVSTGKQWEIGSKFDYLNGRGSATVAAYTIER EEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEC KDFAVTDPLDPTSSIPVGQQTSKGIEIASSLRITDKLLAEGNFAWVDAQYDEFNEKNPAG CCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHCCCCCCCC VVVSRKGNTPTNVPDRVGNLWLTYDFSPKWQGGVDARYVASVFADNANTMTVPSYTLFGS EEEECCCCCCCCCCHHHCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCEEECCCHHHHHH FLSYKVDSHTTVTGRVRNLTNEVYAEFAHVSPAYYLGTPRTFELAVQTRF HHHEEECCCEEEEHHHHHHHHHHHHHHHHCCCEEEECCCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8576065 [H]