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The map label for this gene is ydcN [H]

Identifier: 77459530

GI number: 77459530

Start: 3788986

End: 3789549

Strand: Reverse

Name: ydcN [H]

Synonym: Pfl01_3308

Alternate gene names: 77459530

Gene position: 3789549-3788986 (Counterclockwise)

Preceding gene: 77459538

Following gene: 77459529

Centisome position: 58.86

GC content: 62.23

Gene sequence:

>564_bases
GTGCACAAAGATTCTGTTCAGCGGGCTTCGGTCCTGCAACACGTCAGCCAGAACGTTCGGCGCCTGCGCCACGCCGCCGA
CATGAGCCAGACAGCCCTCGCGGAAAAGTCCGGGGTCAGCCGGCGAATGCTGGTGGCCATCGAGGCCGGCGAGAAGAATG
TCAGCCTGACCACCCTCGACCGCGTCGCCGAAGCCCTCGAAGTGGCCTTCAGCGATCTGATCCAGGCCCCGGACAATCGC
GATCCGGGCCGTATCAACGAACTGGCCTGGGCTGGCAGCATCCCCGGCAGCAAAGCCGTTTTACTGTCCAAGGCCAATGC
CACTCGCGCGGTGGAACAGTGGGAATGGTGCCTGCAACCGGGCGAGGTCTATCCCTCGCAACCGGACGCCGACGGCTGGA
GCGAGCAGATTTTCGTGTTTGAAGGCTGCCTGACGTTGATGCTCGGCGACCAGCCACAGCACATTGCCGCCGGGGAGTTT
TACATGTTCGCCAGTAATCAGCCGCACGCCTATCGCAATGATGGGGAAGTGGCGGTGCGTTTCGTGCGTAATGTGGTGAT
CTGA

Upstream 100 bases:

>100_bases
GTTGGCTGACGTCATGACCTTGCGCACTTTTAAGAAGGAGACGCACAATGCGCCAAATGGTGCGCAGTATACTGCCCAAC
CCCAGCCAGTGAGCAATATA

Downstream 100 bases:

>100_bases
CAGTCGCAACGGAATGAAACACGCTGCAAGTCGCATCGGCATGATAAAAAATGGCATCCGTCTAGACGTCTTCGCGGCGT
CTGAATGACACTGGCCCGGG

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 187

Protein sequence:

>187_residues
MHKDSVQRASVLQHVSQNVRRLRHAADMSQTALAEKSGVSRRMLVAIEAGEKNVSLTTLDRVAEALEVAFSDLIQAPDNR
DPGRINELAWAGSIPGSKAVLLSKANATRAVEQWEWCLQPGEVYPSQPDADGWSEQIFVFEGCLTLMLGDQPQHIAAGEF
YMFASNQPHAYRNDGEVAVRFVRNVVI

Sequences:

>Translated_187_residues
MHKDSVQRASVLQHVSQNVRRLRHAADMSQTALAEKSGVSRRMLVAIEAGEKNVSLTTLDRVAEALEVAFSDLIQAPDNR
DPGRINELAWAGSIPGSKAVLLSKANATRAVEQWEWCLQPGEVYPSQPDADGWSEQIFVFEGCLTLMLGDQPQHIAAGEF
YMFASNQPHAYRNDGEVAVRFVRNVVI
>Mature_187_residues
MHKDSVQRASVLQHVSQNVRRLRHAADMSQTALAEKSGVSRRMLVAIEAGEKNVSLTTLDRVAEALEVAFSDLIQAPDNR
DPGRINELAWAGSIPGSKAVLLSKANATRAVEQWEWCLQPGEVYPSQPDADGWSEQIFVFEGCLTLMLGDQPQHIAAGEF
YMFASNQPHAYRNDGEVAVRFVRNVVI

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787704, Length=170, Percent_Identity=29.4117647058824, Blast_Score=72, Evalue=2e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR014710 [H]

Pfam domain/function: PF07883 Cupin_2; PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 20673; Mature: 20673

Theoretical pI: Translated: 5.62; Mature: 5.62

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHKDSVQRASVLQHVSQNVRRLRHAADMSQTALAEKSGVSRRMLVAIEAGEKNVSLTTLD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHH
RVAEALEVAFSDLIQAPDNRDPGRINELAWAGSIPGSKAVLLSKANATRAVEQWEWCLQP
HHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHCCC
GEVYPSQPDADGWSEQIFVFEGCLTLMLGDQPQHIAAGEFYMFASNQPHAYRNDGEVAVR
CCCCCCCCCCCCCCCEEEHHHHHHHHHCCCCCCCEECCEEEEEECCCCCCCCCCHHHHHH
FVRNVVI
HHHHHCC
>Mature Secondary Structure
MHKDSVQRASVLQHVSQNVRRLRHAADMSQTALAEKSGVSRRMLVAIEAGEKNVSLTTLD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHH
RVAEALEVAFSDLIQAPDNRDPGRINELAWAGSIPGSKAVLLSKANATRAVEQWEWCLQP
HHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHCCC
GEVYPSQPDADGWSEQIFVFEGCLTLMLGDQPQHIAAGEFYMFASNQPHAYRNDGEVAVR
CCCCCCCCCCCCCCCEEEHHHHHHHHHCCCCCCCEECCEEEEEECCCCCCCCCCHHHHHH
FVRNVVI
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]