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The map label for this gene is fecI [H]

Identifier: 77459348

GI number: 77459348

Start: 3588919

End: 3589425

Strand: Reverse

Name: fecI [H]

Synonym: Pfl01_3126

Alternate gene names: 77459348

Gene position: 3589425-3588919 (Counterclockwise)

Preceding gene: 77459353

Following gene: 77459347

Centisome position: 55.75

GC content: 62.92

Gene sequence:

>507_bases
ATGGGGAGTCACAACCCGCATTACCAGGTCATCGGGCAGATGTTCCAAAAGGACTACCGATGGCTGTGCGCGGCGGTCAG
CCGTACGCTCGGTTGCCCGCACAGCGCACAGGACATTGCTTCGGAAACCTTTCTTCGGGTATTGGCGCTGCCCGATCCGC
TGGCAATCCGCGAACCCCGCGCGCTGTTGACCACGATTGCCCGGCGGCTGGTCTATGAAGGCTGGCGCCGGCAGGATCTG
GAGCGCGCTTATCTGCAAAGCCTGGCGCTGGCGCCGGAACCGGTGCATCCGTCGCCCGAGGAACGGGAATTGGTGATCGA
AACGCTGCTGGCGGTGGATCGCTTGCTCAACGGCCTGTCGGCCAAGGCCAAGGCGGCGTTTCTCTACCACCAACTCGACG
GCCTGACCTACAGCGAAATCGGCGAACGCCTCGGCGTGTCCACCAGCCGCGTGCAGCAATACATGGTCGAGGCGTTCAAG
CGTTGCTATCAGGCGATGCAGGCATGA

Upstream 100 bases:

>100_bases
CAGGCGCTATTGCACAGTCGCATCCCTGATCACCGCCGGAAGATCCCGGCGTATCCATGGATTTTCGCAGCGGGTGGAAC
CCGTTTTCAGGGAGTAACGC

Downstream 100 bases:

>100_bases
GGCCGGACGAAACGCTGATCGACGAAGCGGCGCAATGGATGGCGCTGCTGCAATCGGGGCACGTCAGCCTGCAGGAGCGC
GCCGCCTTCGACGCCTGGCG

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 168; Mature: 167

Protein sequence:

>168_residues
MGSHNPHYQVIGQMFQKDYRWLCAAVSRTLGCPHSAQDIASETFLRVLALPDPLAIREPRALLTTIARRLVYEGWRRQDL
ERAYLQSLALAPEPVHPSPEERELVIETLLAVDRLLNGLSAKAKAAFLYHQLDGLTYSEIGERLGVSTSRVQQYMVEAFK
RCYQAMQA

Sequences:

>Translated_168_residues
MGSHNPHYQVIGQMFQKDYRWLCAAVSRTLGCPHSAQDIASETFLRVLALPDPLAIREPRALLTTIARRLVYEGWRRQDL
ERAYLQSLALAPEPVHPSPEERELVIETLLAVDRLLNGLSAKAKAAFLYHQLDGLTYSEIGERLGVSTSRVQQYMVEAFK
RCYQAMQA
>Mature_167_residues
GSHNPHYQVIGQMFQKDYRWLCAAVSRTLGCPHSAQDIASETFLRVLALPDPLAIREPRALLTTIARRLVYEGWRRQDLE
RAYLQSLALAPEPVHPSPEERELVIETLLAVDRLLNGLSAKAKAAFLYHQLDGLTYSEIGERLGVSTSRVQQYMVEAFKR
CYQAMQA

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor regulates the fec genes for iron dicitrate transport (Probable) [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790746, Length=149, Percent_Identity=47.6510067114094, Blast_Score=140, Evalue=3e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 19070; Mature: 18939

Theoretical pI: Translated: 8.08; Mature: 8.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGSHNPHYQVIGQMFQKDYRWLCAAVSRTLGCPHSAQDIASETFLRVLALPDPLAIREPR
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCHH
ALLTTIARRLVYEGWRRQDLERAYLQSLALAPEPVHPSPEERELVIETLLAVDRLLNGLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
AKAKAAFLYHQLDGLTYSEIGERLGVSTSRVQQYMVEAFKRCYQAMQA
HHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
GSHNPHYQVIGQMFQKDYRWLCAAVSRTLGCPHSAQDIASETFLRVLALPDPLAIREPR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCHH
ALLTTIARRLVYEGWRRQDLERAYLQSLALAPEPVHPSPEERELVIETLLAVDRLLNGLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
AKAKAAFLYHQLDGLTYSEIGERLGVSTSRVQQYMVEAFKRCYQAMQA
HHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2254251; 7610040; 9278503; 8052622 [H]