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The map label for this gene is rbsB [H]

Identifier: 77459332

GI number: 77459332

Start: 3569162

End: 3570235

Strand: Reverse

Name: rbsB [H]

Synonym: Pfl01_3110

Alternate gene names: 77459332

Gene position: 3570235-3569162 (Counterclockwise)

Preceding gene: 77459333

Following gene: 77459330

Centisome position: 55.45

GC content: 61.55

Gene sequence:

>1074_bases
ATGTTCAAGTTTCTCCACCTCAGCCTGCTGCTGTTCGGCGCGGTTTTCGGTACGTGCGCGCGTGCAGAGTCGGTGCTGTT
CCTGAATCCGGGCTCGACCCAGGAAGCGTTTTGGGTCAGCTACTCGCAATTCATGCAGGCCGCCGCCCGGGACCTGGGCA
TCGACTTGCGCATCCTCTATGCCCAGCGCCAGCCGGAACTGACCCTGGCTCAGGCGCGACTGGCCCTGCAGGGGCCTGAG
CGCCCGGACTATCTGGTGTTCGTCAATGAACAGTACGTGGCGCCGCAGATCCTGCGTATGGCCAATGGCAGCGGCGTGAA
GCTCTTTATCGTCAACTCGGCACTGACGCCCAACCAGAAGGCGATGATGGCCGATCGTGCTGATCGCATCGGCAGTCTGG
TGCCCAACGATGAAGAGGGCGGCTACTTGATGATGAAGGAGCTGATTCGTCTGCATCCGGCTGTCGCGCCCGGTGAAAGC
ATCGACCTGCTGGCCTTTTCCGGTCTGAAGATCACGCCCTCGGCCCAACTGCGAGAAAAAGGCATGCAACGGGCACTCGC
CGAGCATCCTCAGGTGCACCTGCGGCAACTGGTCTACGGCGGCTGGACGCAACAGCGTGCCTACGAGCAGGCCAGGCAAT
TGCTGGTCCGCTATCCCAAGGTGTCATTGGTGTGGGCGGCCAATGATGAAATGGCCTTCGGCGCGATGCGTGCCGTTTCG
GAAGCCGGCAAGGTGCCGGGCAAAGACGTGCTGTTCAGCGCGGTCAATACCTCGCCAGAAGCGTTGCAGGCGTTGGTTGA
CGGGCGGCTGAGCGCGTTGCTGGGCGGCCATTTCACCCTCGGTGGCTGGGCACTGGTCGAGCTGCATGATCACGCGCAGG
GTGTCGATCTGAATCAGTACGGCGGTCGTGACCGACAGATTCCGTTGCTGCAACTGATCGATCGGGATCATGCCCGCCGA
ATCCTTGCCATGGGCGCCTCACCGGACTATGGCGTGCACTTTCGCAAGCTCTCGGCGAAAGGCCGTCCGGTTTCCTACCG
CTATCCGTTCAATCTGCAGACACTGATGCACTGA

Upstream 100 bases:

>100_bases
GCTTGCGACGATTGTCGGACAAAAGGCGGGATCAAGCGCCAAAGGCCAGGTGATCAATGGCTATAATGCGCGGCCATTTT
TCCTTGGGCCCGGATGATTC

Downstream 100 bases:

>100_bases
GCGAGTCAGACGCCGGCCAGATGCACCACCAGTTGAACGATGCCGAACAGCGTCAGGGCGAACACTGCCGTGAACGCAAT
GCCCAGAAAGATGAAATGAC

Product: periplasmic binding protein/LacI transcriptional regulator

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 357; Mature: 357

Protein sequence:

>357_residues
MFKFLHLSLLLFGAVFGTCARAESVLFLNPGSTQEAFWVSYSQFMQAAARDLGIDLRILYAQRQPELTLAQARLALQGPE
RPDYLVFVNEQYVAPQILRMANGSGVKLFIVNSALTPNQKAMMADRADRIGSLVPNDEEGGYLMMKELIRLHPAVAPGES
IDLLAFSGLKITPSAQLREKGMQRALAEHPQVHLRQLVYGGWTQQRAYEQARQLLVRYPKVSLVWAANDEMAFGAMRAVS
EAGKVPGKDVLFSAVNTSPEALQALVDGRLSALLGGHFTLGGWALVELHDHAQGVDLNQYGGRDRQIPLLQLIDRDHARR
ILAMGASPDYGVHFRKLSAKGRPVSYRYPFNLQTLMH

Sequences:

>Translated_357_residues
MFKFLHLSLLLFGAVFGTCARAESVLFLNPGSTQEAFWVSYSQFMQAAARDLGIDLRILYAQRQPELTLAQARLALQGPE
RPDYLVFVNEQYVAPQILRMANGSGVKLFIVNSALTPNQKAMMADRADRIGSLVPNDEEGGYLMMKELIRLHPAVAPGES
IDLLAFSGLKITPSAQLREKGMQRALAEHPQVHLRQLVYGGWTQQRAYEQARQLLVRYPKVSLVWAANDEMAFGAMRAVS
EAGKVPGKDVLFSAVNTSPEALQALVDGRLSALLGGHFTLGGWALVELHDHAQGVDLNQYGGRDRQIPLLQLIDRDHARR
ILAMGASPDYGVHFRKLSAKGRPVSYRYPFNLQTLMH
>Mature_357_residues
MFKFLHLSLLLFGAVFGTCARAESVLFLNPGSTQEAFWVSYSQFMQAAARDLGIDLRILYAQRQPELTLAQARLALQGPE
RPDYLVFVNEQYVAPQILRMANGSGVKLFIVNSALTPNQKAMMADRADRIGSLVPNDEEGGYLMMKELIRLHPAVAPGES
IDLLAFSGLKITPSAQLREKGMQRALAEHPQVHLRQLVYGGWTQQRAYEQARQLLVRYPKVSLVWAANDEMAFGAMRAVS
EAGKVPGKDVLFSAVNTSPEALQALVDGRLSALLGGHFTLGGWALVELHDHAQGVDLNQYGGRDRQIPLLQLIDRDHARR
ILAMGASPDYGVHFRKLSAKGRPVSYRYPFNLQTLMH

Specific function: Involved in the high-affinity D-ribose membrane transport system and also serves as the primary chemoreceptor for chemotaxis [H]

COG id: COG1879

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790192, Length=269, Percent_Identity=24.5353159851301, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1790674, Length=265, Percent_Identity=24.1509433962264, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: 3940 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 5900 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 1520 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 39622; Mature: 39622

Theoretical pI: Translated: 9.54; Mature: 9.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKFLHLSLLLFGAVFGTCARAESVLFLNPGSTQEAFWVSYSQFMQAAARDLGIDLRILY
CCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEE
AQRQPELTLAQARLALQGPERPDYLVFVNEQYVAPQILRMANGSGVKLFIVNSALTPNQK
ECCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHCCCCCEEEEEEECCCCCCHH
AMMADRADRIGSLVPNDEEGGYLMMKELIRLHPAVAPGESIDLLAFSGLKITPSAQLREK
HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEEECCCHHHHHH
GMQRALAEHPQVHLRQLVYGGWTQQRAYEQARQLLVRYPKVSLVWAANDEMAFGAMRAVS
HHHHHHHHCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHH
EAGKVPGKDVLFSAVNTSPEALQALVDGRLSALLGGHFTLGGWALVELHDHAQGVDLNQY
HHCCCCCHHHEEEECCCCHHHHHHHHHHHHHHHHCCCEEECCEEEEEEECCCCCCCCHHC
GGRDRQIPLLQLIDRDHARRILAMGASPDYGVHFRKLSAKGRPVSYRYPFNLQTLMH
CCCCCCCHHHHHHCCHHHHEEEEECCCCCCCEEEEEECCCCCEEEEECCCCHHHHCC
>Mature Secondary Structure
MFKFLHLSLLLFGAVFGTCARAESVLFLNPGSTQEAFWVSYSQFMQAAARDLGIDLRILY
CCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEE
AQRQPELTLAQARLALQGPERPDYLVFVNEQYVAPQILRMANGSGVKLFIVNSALTPNQK
ECCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHCCCCCEEEEEEECCCCCCHH
AMMADRADRIGSLVPNDEEGGYLMMKELIRLHPAVAPGESIDLLAFSGLKITPSAQLREK
HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEEECCCHHHHHH
GMQRALAEHPQVHLRQLVYGGWTQQRAYEQARQLLVRYPKVSLVWAANDEMAFGAMRAVS
HHHHHHHHCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHH
EAGKVPGKDVLFSAVNTSPEALQALVDGRLSALLGGHFTLGGWALVELHDHAQGVDLNQY
HHCCCCCHHHEEEECCCCHHHHHHHHHHHHHHHHCCCEEECCEEEEEEECCCCCCCCHHC
GGRDRQIPLLQLIDRDHARRILAMGASPDYGVHFRKLSAKGRPVSYRYPFNLQTLMH
CCCCCCCHHHHHHCCHHHHEEEEECCCCCCCEEEEEECCCCCEEEEECCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 6313683; 7686882; 9278503; 3011793; 3011794; 8899705; 9298646; 1583688; 7982928; 9641984 [H]