| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is pspF [C]
Identifier: 77459319
GI number: 77459319
Start: 3546478
End: 3547479
Strand: Reverse
Name: pspF [C]
Synonym: Pfl01_3097
Alternate gene names: 77459319
Gene position: 3547479-3546478 (Counterclockwise)
Preceding gene: 77459320
Following gene: 77459318
Centisome position: 55.1
GC content: 62.77
Gene sequence:
>1002_bases ATGACCGACACCCCGCATTTCCCGCTCTCCGCCGTGGTCGGCGCCGATGATTTGAAACTGGCGCTGTACCTGACGGCCAT TGACCCGAAAATCGGCGGCGTGCTGATCGAAGGCCCGCGTGGCATGGCCAAGTCGACGCTCGCCCGGGGGCTGGCGGATC TGTTGGCCAGTGGTCAGTTCGTTACCTTGCCGTTGGGTGCTACTGAAGAGCGATTGGTCGGCACGCTGGATCTGGACGCG GCGTTGAGCGACGGTCGTGCGCAGTTTTCTCCGGGTGTGCTGGCGAAGGCGGACGGCGGCGTGTTGTACGTCGATGAGGT GAATCTGTTGCCGGATCATCTGGTGGATCTGCTGCTTGATGTGGCTGCCAGCGGCACCAACCTGATCGAGCGCGACGGCA TTTCCCATCGACATTCGGCGAAGTTCGTATTGATCGGCACGATGAACCCGGAAGAGGGGGAATTGCGTCCGCAATTGCTG GATCGTTTCGGCCTTAACGTCGCGCTGAGCGGTCATACGGCGCCGGCCGAGCGGGGGCAGATCATTCGTCGTCGGCTGGA TTTCGACAGCGACCCGCAGGTGTTTTGTGCGCAGTGGGAGGCTGATCAGCAAGCTCTGCGTGAGCGTTGTGAAAGCGCCC GCCATGCCTTGGCGAATATTCCCCTCGACGATGAAGCGCTGGCACAGATCACCGAGCGCTGCTTTGCGGCAGGCGTCGAC GGTTTGCGCGCCGATCTGGTCTGGCTGCGTGCGGCGCGGGCTCATGCGGCGTGGCGCGGGGCTGAAACCATTGCCGAGCA AGACATTGATGCCGTGGCTGAGCTTGCATTGCGCCATCGTCGCCGCGAACAGTCTTCATCCCCTGCACAGCCACCGGCGC AATCGCCGTCCGGTACTCACGCCGAACCGAGCGAAGGGCAGGGGCAATGGGGTGAAATGCCGGCACCGGCATTGGTTACC GGCGCACGCCGTGAAGTTCCGACCTGGCCAAAAAAGCTTTAG
Upstream 100 bases:
>100_bases TCGAAGCGCAGCAGCGCGGGATGTGGCAGGAGCCGGGCGCCTACAAAGAAGCCCTGGAAAACCTGCTGCTGGACATAGAA GAAGAGAGCTGAGACTGAAC
Downstream 100 bases:
>100_bases GCATTCGCCCCCGGTCCGACGCGGGGGCGAATGCCAGACCCCGCGCCGGACGCCTCGATAACGGTCGCCAGGGCACGCGT CACGAGGCTTGCAGTGGCTC
Product: protoporphyrin IX magnesium-chelatase
Products: ADP; phosphate; Mg-protoporphyrin IX; H+
Alternate protein names: NA
Number of amino acids: Translated: 333; Mature: 332
Protein sequence:
>333_residues MTDTPHFPLSAVVGADDLKLALYLTAIDPKIGGVLIEGPRGMAKSTLARGLADLLASGQFVTLPLGATEERLVGTLDLDA ALSDGRAQFSPGVLAKADGGVLYVDEVNLLPDHLVDLLLDVAASGTNLIERDGISHRHSAKFVLIGTMNPEEGELRPQLL DRFGLNVALSGHTAPAERGQIIRRRLDFDSDPQVFCAQWEADQQALRERCESARHALANIPLDDEALAQITERCFAAGVD GLRADLVWLRAARAHAAWRGAETIAEQDIDAVAELALRHRRREQSSSPAQPPAQSPSGTHAEPSEGQGQWGEMPAPALVT GARREVPTWPKKL
Sequences:
>Translated_333_residues MTDTPHFPLSAVVGADDLKLALYLTAIDPKIGGVLIEGPRGMAKSTLARGLADLLASGQFVTLPLGATEERLVGTLDLDA ALSDGRAQFSPGVLAKADGGVLYVDEVNLLPDHLVDLLLDVAASGTNLIERDGISHRHSAKFVLIGTMNPEEGELRPQLL DRFGLNVALSGHTAPAERGQIIRRRLDFDSDPQVFCAQWEADQQALRERCESARHALANIPLDDEALAQITERCFAAGVD GLRADLVWLRAARAHAAWRGAETIAEQDIDAVAELALRHRRREQSSSPAQPPAQSPSGTHAEPSEGQGQWGEMPAPALVT GARREVPTWPKKL >Mature_332_residues TDTPHFPLSAVVGADDLKLALYLTAIDPKIGGVLIEGPRGMAKSTLARGLADLLASGQFVTLPLGATEERLVGTLDLDAA LSDGRAQFSPGVLAKADGGVLYVDEVNLLPDHLVDLLLDVAASGTNLIERDGISHRHSAKFVLIGTMNPEEGELRPQLLD RFGLNVALSGHTAPAERGQIIRRRLDFDSDPQVFCAQWEADQQALRERCESARHALANIPLDDEALAQITERCFAAGVDG LRADLVWLRAARAHAAWRGAETIAEQDIDAVAELALRHRRREQSSSPAQPPAQSPSGTHAEPSEGQGQWGEMPAPALVTG ARREVPTWPKKL
Specific function: Transcriptional Activator For The Phage Shock Protein (Psp) Operon (Pspabce). [C]
COG id: COG1239
COG function: function code H; Mg-chelatase subunit ChlI
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 VWFA domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR011704 - InterPro: IPR012804 - InterPro: IPR002035 [H]
Pfam domain/function: PF07728 AAA_5; PF00092 VWA [H]
EC number: 6.6.1.1
Molecular weight: Translated: 35772; Mature: 35641
Theoretical pI: Translated: 4.91; Mature: 4.91
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDTPHFPLSAVVGADDLKLALYLTAIDPKIGGVLIEGPRGMAKSTLARGLADLLASGQF CCCCCCCCHHEECCCCCEEEEEEEEEECCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCE VTLPLGATEERLVGTLDLDAALSDGRAQFSPGVLAKADGGVLYVDEVNLLPDHLVDLLLD EEEECCCCHHHHEEEECHHHHHCCCCCCCCCCEEEECCCCEEEEECCCCCHHHHHHHHHH VAASGTNLIERDGISHRHSAKFVLIGTMNPEEGELRPQLLDRFGLNVALSGHTAPAERGQ HHCCCCCHHHHCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHCCEEEECCCCCCHHHHH IIRRRLDFDSDPQVFCAQWEADQQALRERCESARHALANIPLDDEALAQITERCFAAGVD HHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCC GLRADLVWLRAARAHAAWRGAETIAEQDIDAVAELALRHRRREQSSSPAQPPAQSPSGTH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC AEPSEGQGQWGEMPAPALVTGARREVPTWPKKL CCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCC >Mature Secondary Structure TDTPHFPLSAVVGADDLKLALYLTAIDPKIGGVLIEGPRGMAKSTLARGLADLLASGQF CCCCCCCHHEECCCCCEEEEEEEEEECCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCE VTLPLGATEERLVGTLDLDAALSDGRAQFSPGVLAKADGGVLYVDEVNLLPDHLVDLLLD EEEECCCCHHHHEEEECHHHHHCCCCCCCCCCEEEECCCCEEEEECCCCCHHHHHHHHHH VAASGTNLIERDGISHRHSAKFVLIGTMNPEEGELRPQLLDRFGLNVALSGHTAPAERGQ HHCCCCCHHHHCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHCCEEEECCCCCCHHHHH IIRRRLDFDSDPQVFCAQWEADQQALRERCESARHALANIPLDDEALAQITERCFAAGVD HHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCC GLRADLVWLRAARAHAAWRGAETIAEQDIDAVAELALRHRRREQSSSPAQPPAQSPSGTH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC AEPSEGQGQWGEMPAPALVTGARREVPTWPKKL CCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; protoporphyrin IX; Mg2+; H2O
Specific reaction: ATP + protoporphyrin IX + Mg2+ + H2O = ADP + phosphate + Mg-protoporphyrin IX + 2 H+
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]