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The map label for this gene is yddU [C]

Identifier: 77459261

GI number: 77459261

Start: 3477837

End: 3479024

Strand: Direct

Name: yddU [C]

Synonym: Pfl01_3039

Alternate gene names: 77459261

Gene position: 3477837-3479024 (Clockwise)

Preceding gene: 77459260

Following gene: 77459262

Centisome position: 54.02

GC content: 60.77

Gene sequence:

>1188_bases
ATGAAGTCCCCTAGCCTGCTGATTGTCGAAGATCACCCGTTCCAGCATCTGTACTTGCAGAACCTGTTCAACGAGCTGGG
CGTCTTCGATCTGGAGTTTGCCAGGGACGGCGAAGAAGCCTTGCGGCGCCTGAAAAACCGCGAGTTCGACCTGGTGCTCA
CCGACCTGCTGATGCCAGGCATGGACGGCGTGCAGTTCATTCAGGGCCTGGCCGCGCAGCCCTCCCGCCCGGCACTGGCG
ATCATGAGTGCCGCCTCACGGCGCATGCTGATGGGCGCGAGCCTGGTGGCGAGCAATCTGCAGGTCAAAGTCATCGGGCT
GATTTCCAAACCGGTCAACAGCGCCGCCCTGCGTTGCCTGATCGACCAGTTGCAGGCGCTGCGTCAGGACGTGCCGATCG
CCGCGCAGGCTGGCATCGACCGCCAGAGCCTTGTACGGGCGTTGGATAACGGTGAGCTGCAGGCCTGGTTTCAACCAAAG
AAGGCGCTGGATAATGGTCGCATCGTCGCCGCCGAAGCACTGGTGCGCTGGGCTCACCCGGAACACGGCACATTGTTGCC
CGGCGCATTTCTACCGGCGCTGATCGCCTGCGATCTCGAAGAGCACCTGCTCTGGCGGGTACTGGAACAGGCAATGGCCG
CCCAAGCGGTATGGCGCCAGCAGGGCTATGACATTCCGGTGTCGATCAACCTGCCGACGCACCTGCTCAACAGTCACGAC
CTGCCGGATCGCATTCTCGCTTTTGTCCTGCAACACAACGGGCTGCCGGCGCGGATCTGTTTCGAGTTGATGGAGTGCTC
GGTGCCCGATGACATAAGCAATTTCTACGCCGGTGCCTGCCGCTTGCGAATCAAGGGTTTCGGCCTGTCACAGGATGATT
TCGGCAAGGGCTACAGTTCCTACATGAACCTGGTCTCAGCCCCTTTCACCGAACTGAAAATCGATCGCGCGCTGGTGCAG
GGTTGTAACCGCAACGCCGAACTGGCGCAGGCGCTGACCAGCATTGTCACCCTTGGCCGGCAACTGGGTCTGACGGTGGT
CGCCGAAGGCGTAGAAACCGCGCAGGAACTTGCTCTGTTGCGTAAAATCGACTGCACTCAGGTCCAGGGTTTCCTGATCT
CCCACGCCGTGTCTTCGGAGCAGTTCCAGCAGTTGCTCTGTCATGACGGACCGGCGAATGTCTGGTGA

Upstream 100 bases:

>100_bases
GAGGCGCTGTGTCTGGCCGCCGGCATGAATCACTGCCTGATCAAACCGTTTACGCTAAGAGCCTTGTCGATCGTCCTGGC
TCCCTACCAACGAGTCGCCC

Downstream 100 bases:

>100_bases
TCCGCAGCACGCGGTGGACGACCGCCACTTGCCATCGAGGTCAGCCGTGTTCAAACGCTTATCCACTTTTATCGACCGAG
CGTATTGATGCCGCACGCCA

Product: diguanylate phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 395; Mature: 395

Protein sequence:

>395_residues
MKSPSLLIVEDHPFQHLYLQNLFNELGVFDLEFARDGEEALRRLKNREFDLVLTDLLMPGMDGVQFIQGLAAQPSRPALA
IMSAASRRMLMGASLVASNLQVKVIGLISKPVNSAALRCLIDQLQALRQDVPIAAQAGIDRQSLVRALDNGELQAWFQPK
KALDNGRIVAAEALVRWAHPEHGTLLPGAFLPALIACDLEEHLLWRVLEQAMAAQAVWRQQGYDIPVSINLPTHLLNSHD
LPDRILAFVLQHNGLPARICFELMECSVPDDISNFYAGACRLRIKGFGLSQDDFGKGYSSYMNLVSAPFTELKIDRALVQ
GCNRNAELAQALTSIVTLGRQLGLTVVAEGVETAQELALLRKIDCTQVQGFLISHAVSSEQFQQLLCHDGPANVW

Sequences:

>Translated_395_residues
MKSPSLLIVEDHPFQHLYLQNLFNELGVFDLEFARDGEEALRRLKNREFDLVLTDLLMPGMDGVQFIQGLAAQPSRPALA
IMSAASRRMLMGASLVASNLQVKVIGLISKPVNSAALRCLIDQLQALRQDVPIAAQAGIDRQSLVRALDNGELQAWFQPK
KALDNGRIVAAEALVRWAHPEHGTLLPGAFLPALIACDLEEHLLWRVLEQAMAAQAVWRQQGYDIPVSINLPTHLLNSHD
LPDRILAFVLQHNGLPARICFELMECSVPDDISNFYAGACRLRIKGFGLSQDDFGKGYSSYMNLVSAPFTELKIDRALVQ
GCNRNAELAQALTSIVTLGRQLGLTVVAEGVETAQELALLRKIDCTQVQGFLISHAVSSEQFQQLLCHDGPANVW
>Mature_395_residues
MKSPSLLIVEDHPFQHLYLQNLFNELGVFDLEFARDGEEALRRLKNREFDLVLTDLLMPGMDGVQFIQGLAAQPSRPALA
IMSAASRRMLMGASLVASNLQVKVIGLISKPVNSAALRCLIDQLQALRQDVPIAAQAGIDRQSLVRALDNGELQAWFQPK
KALDNGRIVAAEALVRWAHPEHGTLLPGAFLPALIACDLEEHLLWRVLEQAMAAQAVWRQQGYDIPVSINLPTHLLNSHD
LPDRILAFVLQHNGLPARICFELMECSVPDDISNFYAGACRLRIKGFGLSQDDFGKGYSSYMNLVSAPFTELKIDRALVQ
GCNRNAELAQALTSIVTLGRQLGLTVVAEGVETAQELALLRKIDCTQVQGFLISHAVSSEQFQQLLCHDGPANVW

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=242, Percent_Identity=33.8842975206612, Blast_Score=139, Evalue=5e-34,
Organism=Escherichia coli, GI226510982, Length=255, Percent_Identity=29.4117647058824, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI87081743, Length=236, Percent_Identity=30.9322033898305, Blast_Score=106, Evalue=3e-24,
Organism=Escherichia coli, GI1790496, Length=246, Percent_Identity=28.4552845528455, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1787541, Length=249, Percent_Identity=28.9156626506024, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI87081845, Length=250, Percent_Identity=28.8, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1786507, Length=245, Percent_Identity=26.9387755102041, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1787055, Length=272, Percent_Identity=26.4705882352941, Blast_Score=85, Evalue=7e-18,
Organism=Escherichia coli, GI87081980, Length=268, Percent_Identity=27.6119402985075, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI87082096, Length=227, Percent_Identity=29.0748898678414, Blast_Score=75, Evalue=8e-15,
Organism=Escherichia coli, GI1788502, Length=255, Percent_Identity=24.3137254901961, Blast_Score=71, Evalue=9e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 43543; Mature: 43543

Theoretical pI: Translated: 5.80; Mature: 5.80

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSPSLLIVEDHPFQHLYLQNLFNELGVFDLEFARDGEEALRRLKNREFDLVLTDLLMPG
CCCCCEEEEECCCHHHHHHHHHHHHHCCEEEHHHCCHHHHHHHHHCCCHHHHHHHHHCCC
MDGVQFIQGLAAQPSRPALAIMSAASRRMLMGASLVASNLQVKVIGLISKPVNSAALRCL
CCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHCCHHHHHHHHH
IDQLQALRQDVPIAAQAGIDRQSLVRALDNGELQAWFQPKKALDNGRIVAAEALVRWAHP
HHHHHHHHHCCCCHHHCCCCHHHHHHHHCCCCEEEEECHHHHCCCCCEEHHHHHHHHCCC
EHGTLLPGAFLPALIACDLEEHLLWRVLEQAMAAQAVWRQQGYDIPVSINLPTHLLNSHD
CCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCHHHHCCCC
LPDRILAFVLQHNGLPARICFELMECSVPDDISNFYAGACRLRIKGFGLSQDDFGKGYSS
CHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHEEEEEEECCCCCHHHCCCHHH
YMNLVSAPFTELKIDRALVQGCNRNAELAQALTSIVTLGRQLGLTVVAEGVETAQELALL
HHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
RKIDCTQVQGFLISHAVSSEQFQQLLCHDGPANVW
HHCCHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MKSPSLLIVEDHPFQHLYLQNLFNELGVFDLEFARDGEEALRRLKNREFDLVLTDLLMPG
CCCCCEEEEECCCHHHHHHHHHHHHHCCEEEHHHCCHHHHHHHHHCCCHHHHHHHHHCCC
MDGVQFIQGLAAQPSRPALAIMSAASRRMLMGASLVASNLQVKVIGLISKPVNSAALRCL
CCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHCCHHHHHHHHH
IDQLQALRQDVPIAAQAGIDRQSLVRALDNGELQAWFQPKKALDNGRIVAAEALVRWAHP
HHHHHHHHHCCCCHHHCCCCHHHHHHHHCCCCEEEEECHHHHCCCCCEEHHHHHHHHCCC
EHGTLLPGAFLPALIACDLEEHLLWRVLEQAMAAQAVWRQQGYDIPVSINLPTHLLNSHD
CCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCHHHHCCCC
LPDRILAFVLQHNGLPARICFELMECSVPDDISNFYAGACRLRIKGFGLSQDDFGKGYSS
CHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHEEEEEEECCCCCHHHCCCHHH
YMNLVSAPFTELKIDRALVQGCNRNAELAQALTSIVTLGRQLGLTVVAEGVETAQELALL
HHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
RKIDCTQVQGFLISHAVSSEQFQQLLCHDGPANVW
HHCCHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]