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The map label for this gene is rpoE [H]

Identifier: 77459110

GI number: 77459110

Start: 3325727

End: 3326266

Strand: Direct

Name: rpoE [H]

Synonym: Pfl01_2885

Alternate gene names: 77459110

Gene position: 3325727-3326266 (Clockwise)

Preceding gene: 77459109

Following gene: 77459111

Centisome position: 51.65

GC content: 66.11

Gene sequence:

>540_bases
GTGGAGGCGAACATTTTCAGCGATCAGGCCTTCAGGGCCGAACTCGGGCAACACCTGGCGCGCCTGTGGCGTTACGGCTT
GCTGCTGTCGCGCAACCGGCACGTGGCCGAGGATCTGGTGCAAGCCACCTGCGTGCGGGCGCTGGAGCGTTCGGGTCAGT
ACGTGGCCGGCACACGCATGGATCGCTGGCTGCTGAGCATTCTGCATTCGATCTGGCTCAACGAAGTGCGCGCCCGCCGG
GTGCGCCAGGGCCAGGGCGTGGCGGACGCCGACAGCCAGCTGACGTTCGATGGCGAATACGCCGCGCAAACCCACGTCAT
GGCCGCGCAGGTGATCCGCCGGGTCGATGCGCTGCCGGAAACCCAACGTGAAACGGTGTATCTCGCTTACGTCGAGGGCC
TGTCCTATCGCGAAGTCGCCGAAATCCTGCAAGTACCGATCGGCACGGTCATGAGCCGGCTGGCCACCGCGCGCCTGAAA
CTGGCCGAATACCCGCCGCTGCAAGCGGTCCCGAACAGCCCCGCAGGAGACCGGCAATGA

Upstream 100 bases:

>100_bases
AGCAGTTGCAGCACATCCAGAAGATCTGCGGCACGACCTGCGAGGAATACCGGGACCTGGCCGAAGCCATCAACGATTCA
TCGAAAACCTGACACGACAC

Downstream 100 bases:

>100_bases
ATGCGCCTTCCGACGAGCAACTGGTGGCGTATCTGGACGATGAACTGGATCGCGAACAGCGCAGCCAACTCGACAACCTC
ATCGCCGACGATCCGCTGCT

Product: sigma-24 (FecI)

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 179; Mature: 179

Protein sequence:

>179_residues
MEANIFSDQAFRAELGQHLARLWRYGLLLSRNRHVAEDLVQATCVRALERSGQYVAGTRMDRWLLSILHSIWLNEVRARR
VRQGQGVADADSQLTFDGEYAAQTHVMAAQVIRRVDALPETQRETVYLAYVEGLSYREVAEILQVPIGTVMSRLATARLK
LAEYPPLQAVPNSPAGDRQ

Sequences:

>Translated_179_residues
MEANIFSDQAFRAELGQHLARLWRYGLLLSRNRHVAEDLVQATCVRALERSGQYVAGTRMDRWLLSILHSIWLNEVRARR
VRQGQGVADADSQLTFDGEYAAQTHVMAAQVIRRVDALPETQRETVYLAYVEGLSYREVAEILQVPIGTVMSRLATARLK
LAEYPPLQAVPNSPAGDRQ
>Mature_179_residues
MEANIFSDQAFRAELGQHLARLWRYGLLLSRNRHVAEDLVQATCVRALERSGQYVAGTRMDRWLLSILHSIWLNEVRARR
VRQGQGVADADSQLTFDGEYAAQTHVMAAQVIRRVDALPETQRETVYLAYVEGLSYREVAEILQVPIGTVMSRLATARLK
LAEYPPLQAVPNSPAGDRQ

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014293
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 20203; Mature: 20203

Theoretical pI: Translated: 8.45; Mature: 8.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEANIFSDQAFRAELGQHLARLWRYGLLLSRNRHVAEDLVQATCVRALERSGQYVAGTRM
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCEEEHHHH
DRWLLSILHSIWLNEVRARRVRQGQGVADADSQLTFDGEYAAQTHVMAAQVIRRVDALPE
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHCCCC
TQRETVYLAYVEGLSYREVAEILQVPIGTVMSRLATARLKLAEYPPLQAVPNSPAGDRQ
CCHHEEEEHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MEANIFSDQAFRAELGQHLARLWRYGLLLSRNRHVAEDLVQATCVRALERSGQYVAGTRM
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCEEEHHHH
DRWLLSILHSIWLNEVRARRVRQGQGVADADSQLTFDGEYAAQTHVMAAQVIRRVDALPE
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHCCCC
TQRETVYLAYVEGLSYREVAEILQVPIGTVMSRLATARLKLAEYPPLQAVPNSPAGDRQ
CCHHEEEEHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]