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The map label for this gene is pocR [H]

Identifier: 77458866

GI number: 77458866

Start: 3023340

End: 3024245

Strand: Reverse

Name: pocR [H]

Synonym: Pfl01_2641

Alternate gene names: 77458866

Gene position: 3024245-3023340 (Counterclockwise)

Preceding gene: 77458867

Following gene: 77458865

Centisome position: 46.97

GC content: 58.17

Gene sequence:

>906_bases
ATGACCCGAACAGCCCGCGTGACTGACCCTTCTTATGAGCTGATGGATGACCACAACGGGTTGTCCATCATCTATCGCCA
GCACGGTTTCCCCTGCCCGCTGGTGCGCTGGCATTTTCACAAGGAGTACGAACTGCACCTGATCGTCGCCAGTTCGGGCA
AGGTGTTCATCGGCGACTACATCGGCAACTTCTATCCACAGACCCTGTTCCTGACCGGCCCGAATCTGCCGCATAACTGG
ATCAGCCAGGTGGCCGAAGATGAAGTGGTCGAGAAACGCGACATGCTGGTCAACTTCACCGATGAACTGTTCGAAAGCGG
CCATCAGGTATTCGCCGAACTCAAGACCCTGGCACCGCTGCTCGAACGTGCGCAGTACGGCATCGAATTCCGCTCGCCGC
AGACAATTCGCCAGGCCATGACCCTGATGCAACGCATCGCCGATTCAACCGGCATCACCCGTCTCGGGCACTTTTTCATC
CTGATGGAATTGCTGGCGGCGTGCGACGACTACCAACTGCTGTCCGGCGCAACCACCCCGCAACTGGCCGACGAGCACAA
CATCGACCGCACCAACCGCGCGGTGGATTACATCTTCGCCCACTACGCCCGCGAGCTACCCCTTGAGGAAGTCGCCGAGC
ACCTGGGCATGAAACCCACCTATTTCAGCCGCGTGTTCAAGCAGGCCACCGGGCGCAATTTCATCGAATTCGTCAATCGC
CTGCGCATCAGCAAATCCTGCGAGTTACTGGCCGATGGCGACAAACCGGTGACCGAGGTGTGTTTCGAGTCGGGCTTCAA
CAATATTTCCAATTTCAATCGGCGCTTTCAGCAGCTCAAAGGCATGACGCCATCGCATTACCGGCGGCTGGTGGTGCAGC
GCCTGACCGAGCAAAACCACGGCTGA

Upstream 100 bases:

>100_bases
GAAAGCCCGAGAACGGGCGCTCTGAGCGGCAATGGAAACTGGCGCAACCGACGAGGAACGAGGCATGATCACCGGGCGAT
AACAATAAAAGCGCTCTGCC

Downstream 100 bases:

>100_bases
GCAGGAAAATCTGTACGGTTTCGCGCCCTTCGCCATGCTGAAACGCCCTTCCCTGCGGTTATCGCGCCAATCCCGAGTGC
AAAAAAGTATCGATTCAAGT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 300

Protein sequence:

>301_residues
MTRTARVTDPSYELMDDHNGLSIIYRQHGFPCPLVRWHFHKEYELHLIVASSGKVFIGDYIGNFYPQTLFLTGPNLPHNW
ISQVAEDEVVEKRDMLVNFTDELFESGHQVFAELKTLAPLLERAQYGIEFRSPQTIRQAMTLMQRIADSTGITRLGHFFI
LMELLAACDDYQLLSGATTPQLADEHNIDRTNRAVDYIFAHYARELPLEEVAEHLGMKPTYFSRVFKQATGRNFIEFVNR
LRISKSCELLADGDKPVTEVCFESGFNNISNFNRRFQQLKGMTPSHYRRLVVQRLTEQNHG

Sequences:

>Translated_301_residues
MTRTARVTDPSYELMDDHNGLSIIYRQHGFPCPLVRWHFHKEYELHLIVASSGKVFIGDYIGNFYPQTLFLTGPNLPHNW
ISQVAEDEVVEKRDMLVNFTDELFESGHQVFAELKTLAPLLERAQYGIEFRSPQTIRQAMTLMQRIADSTGITRLGHFFI
LMELLAACDDYQLLSGATTPQLADEHNIDRTNRAVDYIFAHYARELPLEEVAEHLGMKPTYFSRVFKQATGRNFIEFVNR
LRISKSCELLADGDKPVTEVCFESGFNNISNFNRRFQQLKGMTPSHYRRLVVQRLTEQNHG
>Mature_300_residues
TRTARVTDPSYELMDDHNGLSIIYRQHGFPCPLVRWHFHKEYELHLIVASSGKVFIGDYIGNFYPQTLFLTGPNLPHNWI
SQVAEDEVVEKRDMLVNFTDELFESGHQVFAELKTLAPLLERAQYGIEFRSPQTIRQAMTLMQRIADSTGITRLGHFFIL
MELLAACDDYQLLSGATTPQLADEHNIDRTNRAVDYIFAHYARELPLEEVAEHLGMKPTYFSRVFKQATGRNFIEFVNRL
RISKSCELLADGDKPVTEVCFESGFNNISNFNRRFQQLKGMTPSHYRRLVVQRLTEQNHG

Specific function: Positive regulatory protein of pdu and cob operons [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790559, Length=103, Percent_Identity=28.1553398058252, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR018771 [H]

Pfam domain/function: PF10114 Hist_Kin_Sens; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 34793; Mature: 34662

Theoretical pI: Translated: 6.57; Mature: 6.57

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRTARVTDPSYELMDDHNGLSIIYRQHGFPCPLVRWHFHKEYELHLIVASSGKVFIGDY
CCCCCCCCCCCHHHHCCCCCCEEEEECCCCCCCHHHHCCCCCEEEEEEEECCCCEEEHHH
IGNFYPQTLFLTGPNLPHNWISQVAEDEVVEKRDMLVNFTDELFESGHQVFAELKTLAPL
HHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LERAQYGIEFRSPQTIRQAMTLMQRIADSTGITRLGHFFILMELLAACDDYQLLSGATTP
HHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCC
QLADEHNIDRTNRAVDYIFAHYARELPLEEVAEHLGMKPTYFSRVFKQATGRNFIEFVNR
CCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHH
LRISKSCELLADGDKPVTEVCFESGFNNISNFNRRFQQLKGMTPSHYRRLVVQRLTEQNH
HHHHCCCHHEECCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
G
C
>Mature Secondary Structure 
TRTARVTDPSYELMDDHNGLSIIYRQHGFPCPLVRWHFHKEYELHLIVASSGKVFIGDY
CCCCCCCCCCHHHHCCCCCCEEEEECCCCCCCHHHHCCCCCEEEEEEEECCCCEEEHHH
IGNFYPQTLFLTGPNLPHNWISQVAEDEVVEKRDMLVNFTDELFESGHQVFAELKTLAPL
HHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LERAQYGIEFRSPQTIRQAMTLMQRIADSTGITRLGHFFILMELLAACDDYQLLSGATTP
HHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCC
QLADEHNIDRTNRAVDYIFAHYARELPLEEVAEHLGMKPTYFSRVFKQATGRNFIEFVNR
CCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHH
LRISKSCELLADGDKPVTEVCFESGFNNISNFNRRFQQLKGMTPSHYRRLVVQRLTEQNH
HHHHCCCHHEECCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
G
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8071226; 9352910; 11677609; 8501034 [H]