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The map label for this gene is yqhC [H]

Identifier: 77458690

GI number: 77458690

Start: 2819788

End: 2820729

Strand: Reverse

Name: yqhC [H]

Synonym: Pfl01_2465

Alternate gene names: 77458690

Gene position: 2820729-2819788 (Counterclockwise)

Preceding gene: 77458691

Following gene: 77458689

Centisome position: 43.81

GC content: 58.92

Gene sequence:

>942_bases
ATGAACACTAGTGAGAGCCTTGAAATGGAACAAAGCGATGCTTTCATCCTGCAGAACACGGCCATCTACCGTGACGAACT
GGTTCGCCTGCTGACTCAACGCTTTACCACACCCGGCATCTATGAGACCGCCATAGCTCCGCTGCATGTGATTCGTTTCG
ATGCACCTTCGGAGCTGATCCATACCGTGCACAAACCGGCACTTTGCCTGATCGTGCAAGGACAAAAGGAAATCAGCCTG
GGTGACGATCATTACCTCTACGATCCGCTCAGTTACCTGGTGGTCTCGGTGACGCTCCCGGTTGCCGGGCGCGTGCTGAA
GGCCAGTCCGGAAGCGCCCTACCTGTGTATCCGGTTCGATTTCGAGGCCACGGAAATTGCCCAGGTCATCGCCGACGCGC
CGCCGGCGGGCGTACCGGACGAGCCGGAACTGGGCCTTTTCCTTGAAAGGGTCGATGTGCCCCTGCTGGAAACCATGCTT
CGACTGGTCCGACTGCTGGACACCCCGAAAGACATCGGCATGCTGGCACCTCTGGCCTTGCGGGAGCTGTATTACCGCCT
TCTACGCGGCATGCACGGCCGTCGTTTGTATGAGCTTGCCCTCGGCGACTCGCAAACACGTCGGGTTACGCGGGCAATCG
ATTGGTTGAACAACCACTACACCCAACCCTTGCGCATCGAAGAACTCGCCCGGGTCGCCAATTTGGGTAACTCCACATTG
CATCATCGCTTCAAGGCAGTGACCGCCATGAGTCCGCTGCAGTATCAGAAACAACTGCGCCTGCAGGAAGCCCGCCGGCT
GTTGCTCGGCGAAGGGCTGGATGTGGCGAGCGCCTGTTATCGAGCGGGCTACGAAAGCCCGTCGCAATTCAGCCGGGAAT
ACAGTCGCCAGTTTGGCTGCCCACCTTCCAAAGATGCCAGCCGCACGCGTCGCACGGGGTAA

Upstream 100 bases:

>100_bases
CGACGTGCTGTATCACGCCGGAATGATCCTCCATCGGCAATGAGTACTTTGATGATGTCGGGTGAATATCGTCTGCCCGG
GCAGTTCCGGGCAGACGCTG

Downstream 100 bases:

>100_bases
ACCCCGCACGTTGACGCAGACGCCGGGAACGGTTATCCGCCCGGATCGCGAAAGAGGCAGGCAGACCCAAGCCTGCCCCT
TTGCGCAATGCACAGCGAGT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MNTSESLEMEQSDAFILQNTAIYRDELVRLLTQRFTTPGIYETAIAPLHVIRFDAPSELIHTVHKPALCLIVQGQKEISL
GDDHYLYDPLSYLVVSVTLPVAGRVLKASPEAPYLCIRFDFEATEIAQVIADAPPAGVPDEPELGLFLERVDVPLLETML
RLVRLLDTPKDIGMLAPLALRELYYRLLRGMHGRRLYELALGDSQTRRVTRAIDWLNNHYTQPLRIEELARVANLGNSTL
HHRFKAVTAMSPLQYQKQLRLQEARRLLLGEGLDVASACYRAGYESPSQFSREYSRQFGCPPSKDASRTRRTG

Sequences:

>Translated_313_residues
MNTSESLEMEQSDAFILQNTAIYRDELVRLLTQRFTTPGIYETAIAPLHVIRFDAPSELIHTVHKPALCLIVQGQKEISL
GDDHYLYDPLSYLVVSVTLPVAGRVLKASPEAPYLCIRFDFEATEIAQVIADAPPAGVPDEPELGLFLERVDVPLLETML
RLVRLLDTPKDIGMLAPLALRELYYRLLRGMHGRRLYELALGDSQTRRVTRAIDWLNNHYTQPLRIEELARVANLGNSTL
HHRFKAVTAMSPLQYQKQLRLQEARRLLLGEGLDVASACYRAGYESPSQFSREYSRQFGCPPSKDASRTRRTG
>Mature_313_residues
MNTSESLEMEQSDAFILQNTAIYRDELVRLLTQRFTTPGIYETAIAPLHVIRFDAPSELIHTVHKPALCLIVQGQKEISL
GDDHYLYDPLSYLVVSVTLPVAGRVLKASPEAPYLCIRFDFEATEIAQVIADAPPAGVPDEPELGLFLERVDVPLLETML
RLVRLLDTPKDIGMLAPLALRELYYRLLRGMHGRRLYELALGDSQTRRVTRAIDWLNNHYTQPLRIEELARVANLGNSTL
HHRFKAVTAMSPLQYQKQLRLQEARRLLLGEGLDVASACYRAGYESPSQFSREYSRQFGCPPSKDASRTRRTG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082197, Length=293, Percent_Identity=29.6928327645051, Blast_Score=141, Evalue=7e-35,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060
- InterPro:   IPR009594 [H]

Pfam domain/function: PF06719 AraC_N; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 35433; Mature: 35433

Theoretical pI: Translated: 6.95; Mature: 6.95

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTSESLEMEQSDAFILQNTAIYRDELVRLLTQRFTTPGIYETAIAPLHVIRFDAPSELI
CCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHEEEECCHHHHH
HTVHKPALCLIVQGQKEISLGDDHYLYDPLSYLVVSVTLPVAGRVLKASPEAPYLCIRFD
HHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHEECCCCCCEEEEEEC
FEATEIAQVIADAPPAGVPDEPELGLFLERVDVPLLETMLRLVRLLDTPKDIGMLAPLAL
CCHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
RELYYRLLRGMHGRRLYELALGDSQTRRVTRAIDWLNNHYTQPLRIEELARVANLGNSTL
HHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHH
HHRFKAVTAMSPLQYQKQLRLQEARRLLLGEGLDVASACYRAGYESPSQFSREYSRQFGC
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCC
PPSKDASRTRRTG
CCCCCCCHHCCCC
>Mature Secondary Structure
MNTSESLEMEQSDAFILQNTAIYRDELVRLLTQRFTTPGIYETAIAPLHVIRFDAPSELI
CCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHEEEECCHHHHH
HTVHKPALCLIVQGQKEISLGDDHYLYDPLSYLVVSVTLPVAGRVLKASPEAPYLCIRFD
HHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHEECCCCCCEEEEEEC
FEATEIAQVIADAPPAGVPDEPELGLFLERVDVPLLETMLRLVRLLDTPKDIGMLAPLAL
CCHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
RELYYRLLRGMHGRRLYELALGDSQTRRVTRAIDWLNNHYTQPLRIEELARVANLGNSTL
HHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHH
HHRFKAVTAMSPLQYQKQLRLQEARRLLLGEGLDVASACYRAGYESPSQFSREYSRQFGC
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCC
PPSKDASRTRRTG
CCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]