| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is fpvA [H]
Identifier: 77458687
GI number: 77458687
Start: 2815924
End: 2818098
Strand: Reverse
Name: fpvA [H]
Synonym: Pfl01_2462
Alternate gene names: 77458687
Gene position: 2818098-2815924 (Counterclockwise)
Preceding gene: 77458689
Following gene: 77458686
Centisome position: 43.77
GC content: 61.89
Gene sequence:
>2175_bases ATGTCGCGCCCCACCTCGCCACATCGTTTCAACCCGTCACGCAACCTCCTGTCCATGGCCATCTGCATGGCCGTCATGAC CCCGGCGCTGGCCGATGAAACCCGCGAGGTGCAGGACACCGCCCCGCCCGCCACCCTCGAACTCGGCGCGACTGCAATCA CATCCACCCAACTGGGCAGTACCACCGAAGGCTCGGAGTCGTACACCACCGGCACCATGGCCACCGCCACCAAACTGCCG TTGACCCTGCGCGAAACACCACAAGCCGTCACCGTCATCACCCGCCAGCGCATGGACGATCAGGCGATGACCAGCATCAA TGACGTGGTCAACGCCACGCCGGGGCTGTTCCTCGACTACTCCAACGGCCCCGGCCGACAGGCCTACAAAGCCCGGGGCT TCAACATCGACAACCTGATGTACGACGGCATTCCGAGCGGCTACGACGGCGTGAACGTCGGCTCCCAGCCGAATCTGGCG ATGTTCGACCGGGTTGAAGTCGTTCGGGGCGCGACCGGTCTGGTCACCGGTGCCGGCAACCCTTCGGCGGCGATCAACCT GGTGCGCAAACGCCCATTGGCCGAGCAGCGCGTGACCCTGACCGGCGCCGCCGGGACCTGGGACAACTATCGCGGCGAGC TCGATGCTTCCAGCCCGCTCAATGACAGCGGCACCCTGCGCGGCCGGGTGGTCACGTCCTACCACGACGCCAACAGCTTC ATCGATGACGTCGACGAGCAACACAACCTGTTCTACGCCGTCACCGAAGCCGATCTGAGCGACGACACCACTTTGACCCT CGGTTTCTCGCACCAAAAGGACAGGACCAACTACTTTTGGGGTTCATCAATGATCGGCCTCGACGGCCATCACCTCGACC TCCCGCGCTCGTACAACCCCGGCACTTCCTGGGAAGACAAGGATCAGGAAATCAACACCGTCTTCGCCGAGATCCGTCAG CAACTGGCCAACGACTGGAAGCTGCAGGTCAACGCCAACTATTCCGAGCAGAACGCGCTGTTCTCCGGCTCGTACCAGTC GCGCTGGGTCAACGACACCCTGGCCCGCACGGTTTACCAATCCAAGGCCGATGAAAACCAGGCCGGTCTCGACGCCTTCT TCAGCGGCCCGTTCGAAGCCTTCGGACGCAGCCATGAACTGGTGGTCGGCGCCAGCAAACGCATCTACGACCTGACCACC CACAACTACTCGCCGTACGACACCAACTGGCCGATCAACGCCGGCAAGCCGGACTTCGTCCACACCAACAACACACGTGA AGTCACCACTCAGGACGGCGTATACCTGACCACCCGCCTGAGCCTGGCCGACCCGCTGAAACTGATCCTCGGCGGACGTC TGGACTGGTACGACTACGACAACCGCGATGGCGACGGCGATTACAAAGTCACCCGCAACGTCACCCGCTATGCCGGCCTG ATCTACGAGCTGGACGACCATCATTCGGTGTACGCCAGCTACAGCGACATCTTCACCCCGCAGAGCAACAAGGGCACCTC CGGTAACCCGGTCAAGCCGATCGTGGGCAAGAACTACGAGGTCGGCATCAAGGGCGAATACCTGGGCGGCGCGCTGAATG CCAGCCTCGCCGTGTTCCGTGTCGATCAGGAAAACCGCGCGGTGCAGGTGTTCGTGCCGAACTGCCCGCAGTCTTCCTGC TATGAGGCCTCCGGCGAGATCCGCAGCCAGGGTATCGACTTCGAACTGCAAGGCGCGCTCACCGACAACTGGCAGATCGG CGGCGGCTACACCTACGCCCGTACGCACACCATCAAGGATGAGGCGAACCCGCAGAACGTGAACAAGCAGTTCGACACCG ACACGCCGGAGCACCTGTTCAAACTGACCACCCGCTACAACTTTCAGGGCCCGCTGGAAAAACTTCGCGTGGGCGGCAAC ATTTCCTGGCAGAGCCGCATGTACAACGACATCGAACTGCTCGATGGCGGCAACTACCGACTCAAGCAAGGCGCGTACGC CGTGACCGACCTGATGGCCGGCTACCGGGTCAATGAAAACCTCAACCTGCAACTCAACGCCAACAACATCTTCGACCGCA AGTACTACTCCACCATCGCCAACTCCGTCAGCTACGGCGGCGACAGCTATGGCAGCCCGCGCAACATGATGTTGACGGCC AAATACACCTTCTAA
Upstream 100 bases:
>100_bases CTTTCACGAATCGCTTTGTCGCTGTAAAAAACCCTGACACAATTATTGGCAATGATTCTCAACAGCGCTTTGTTTGCTAT TTAATAATCAGGAAGCCTCC
Downstream 100 bases:
>100_bases TTTGTCCAGGCGCAGGGACGCGCCACCCCCGCCAAGATTCCTCCCGCCACACCTACATACCAAAGCGTTAATTTCAAAAA CCCATGTCTGGTGGTCAGTC
Product: TonB-dependent siderophore receptor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 724; Mature: 723
Protein sequence:
>724_residues MSRPTSPHRFNPSRNLLSMAICMAVMTPALADETREVQDTAPPATLELGATAITSTQLGSTTEGSESYTTGTMATATKLP LTLRETPQAVTVITRQRMDDQAMTSINDVVNATPGLFLDYSNGPGRQAYKARGFNIDNLMYDGIPSGYDGVNVGSQPNLA MFDRVEVVRGATGLVTGAGNPSAAINLVRKRPLAEQRVTLTGAAGTWDNYRGELDASSPLNDSGTLRGRVVTSYHDANSF IDDVDEQHNLFYAVTEADLSDDTTLTLGFSHQKDRTNYFWGSSMIGLDGHHLDLPRSYNPGTSWEDKDQEINTVFAEIRQ QLANDWKLQVNANYSEQNALFSGSYQSRWVNDTLARTVYQSKADENQAGLDAFFSGPFEAFGRSHELVVGASKRIYDLTT HNYSPYDTNWPINAGKPDFVHTNNTREVTTQDGVYLTTRLSLADPLKLILGGRLDWYDYDNRDGDGDYKVTRNVTRYAGL IYELDDHHSVYASYSDIFTPQSNKGTSGNPVKPIVGKNYEVGIKGEYLGGALNASLAVFRVDQENRAVQVFVPNCPQSSC YEASGEIRSQGIDFELQGALTDNWQIGGGYTYARTHTIKDEANPQNVNKQFDTDTPEHLFKLTTRYNFQGPLEKLRVGGN ISWQSRMYNDIELLDGGNYRLKQGAYAVTDLMAGYRVNENLNLQLNANNIFDRKYYSTIANSVSYGGDSYGSPRNMMLTA KYTF
Sequences:
>Translated_724_residues MSRPTSPHRFNPSRNLLSMAICMAVMTPALADETREVQDTAPPATLELGATAITSTQLGSTTEGSESYTTGTMATATKLP LTLRETPQAVTVITRQRMDDQAMTSINDVVNATPGLFLDYSNGPGRQAYKARGFNIDNLMYDGIPSGYDGVNVGSQPNLA MFDRVEVVRGATGLVTGAGNPSAAINLVRKRPLAEQRVTLTGAAGTWDNYRGELDASSPLNDSGTLRGRVVTSYHDANSF IDDVDEQHNLFYAVTEADLSDDTTLTLGFSHQKDRTNYFWGSSMIGLDGHHLDLPRSYNPGTSWEDKDQEINTVFAEIRQ QLANDWKLQVNANYSEQNALFSGSYQSRWVNDTLARTVYQSKADENQAGLDAFFSGPFEAFGRSHELVVGASKRIYDLTT HNYSPYDTNWPINAGKPDFVHTNNTREVTTQDGVYLTTRLSLADPLKLILGGRLDWYDYDNRDGDGDYKVTRNVTRYAGL IYELDDHHSVYASYSDIFTPQSNKGTSGNPVKPIVGKNYEVGIKGEYLGGALNASLAVFRVDQENRAVQVFVPNCPQSSC YEASGEIRSQGIDFELQGALTDNWQIGGGYTYARTHTIKDEANPQNVNKQFDTDTPEHLFKLTTRYNFQGPLEKLRVGGN ISWQSRMYNDIELLDGGNYRLKQGAYAVTDLMAGYRVNENLNLQLNANNIFDRKYYSTIANSVSYGGDSYGSPRNMMLTA KYTF >Mature_723_residues SRPTSPHRFNPSRNLLSMAICMAVMTPALADETREVQDTAPPATLELGATAITSTQLGSTTEGSESYTTGTMATATKLPL TLRETPQAVTVITRQRMDDQAMTSINDVVNATPGLFLDYSNGPGRQAYKARGFNIDNLMYDGIPSGYDGVNVGSQPNLAM FDRVEVVRGATGLVTGAGNPSAAINLVRKRPLAEQRVTLTGAAGTWDNYRGELDASSPLNDSGTLRGRVVTSYHDANSFI DDVDEQHNLFYAVTEADLSDDTTLTLGFSHQKDRTNYFWGSSMIGLDGHHLDLPRSYNPGTSWEDKDQEINTVFAEIRQQ LANDWKLQVNANYSEQNALFSGSYQSRWVNDTLARTVYQSKADENQAGLDAFFSGPFEAFGRSHELVVGASKRIYDLTTH NYSPYDTNWPINAGKPDFVHTNNTREVTTQDGVYLTTRLSLADPLKLILGGRLDWYDYDNRDGDGDYKVTRNVTRYAGLI YELDDHHSVYASYSDIFTPQSNKGTSGNPVKPIVGKNYEVGIKGEYLGGALNASLAVFRVDQENRAVQVFVPNCPQSSCY EASGEIRSQGIDFELQGALTDNWQIGGGYTYARTHTIKDEANPQNVNKQFDTDTPEHLFKLTTRYNFQGPLEKLRVGGNI SWQSRMYNDIELLDGGNYRLKQGAYAVTDLMAGYRVNENLNLQLNANNIFDRKYYSTIANSVSYGGDSYGSPRNMMLTAK YTF
Specific function: Receptor for the siderophore ferripyoverdine [H]
COG id: COG4773
COG function: function code P; Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1787344, Length=747, Percent_Identity=33.8688085676038, Blast_Score=388, Evalue=1e-109, Organism=Escherichia coli, GI1786344, Length=776, Percent_Identity=24.7422680412371, Blast_Score=134, Evalue=2e-32, Organism=Escherichia coli, GI1787024, Length=262, Percent_Identity=32.0610687022901, Blast_Score=92, Evalue=1e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR011662 - InterPro: IPR000531 - InterPro: IPR010917 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF07660 STN; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 80212; Mature: 80081
Theoretical pI: Translated: 4.89; Mature: 4.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRPTSPHRFNPSRNLLSMAICMAVMTPALADETREVQDTAPPATLELGATAITSTQLGS CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCEEEECCCCCC TTEGSESYTTGTMATATKLPLTLRETPQAVTVITRQRMDDQAMTSINDVVNATPGLFLDY CCCCCCCEECCCEEEHEECCEEECCCCCEEEHHHHHHCCHHHHHHHHHHHHCCCCEEEEC SNGPGRQAYKARGFNIDNLMYDGIPSGYDGVNVGSQPNLAMFDRVEVVRGATGLVTGAGN CCCCCCCHHEECCCCHHHEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCCC PSAAINLVRKRPLAEQRVTLTGAAGTWDNYRGELDASSPLNDSGTLRGRVVTSYHDANSF CHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCHHHH IDDVDEQHNLFYAVTEADLSDDTTLTLGFSHQKDRTNYFWGSSMIGLDGHHLDLPRSYNP HHHCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCEEEECCEEECCCCCEECCCCCCCC GTSWEDKDQEINTVFAEIRQQLANDWKLQVNANYSEQNALFSGSYQSRWVNDTLARTVYQ CCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEECCCCCCHHHHHHHHHHHH SKADENQAGLDAFFSGPFEAFGRSHELVVGASKRIYDLTTHNYSPYDTNWPINAGKPDFV HCCCCCCCCCHHHHCCCHHHHCCCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCEE HTNNTREVTTQDGVYLTTRLSLADPLKLILGGRLDWYDYDNRDGDGDYKVTRNVTRYAGL ECCCCCEEEECCCEEEEEEECCCCCHHHHHCCCEEECCCCCCCCCCCEEEECCHHHHEEE IYELDDHHSVYASYSDIFTPQSNKGTSGNPVKPIVGKNYEVGIKGEYLGGALNASLAVFR EEEECCCCEEEEEHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCEEEEEE VDQENRAVQVFVPNCPQSSCYEASGEIRSQGIDFELQGALTDNWQIGGGYTYARTHTIKD ECCCCCEEEEEECCCCCCCHHHCCCHHHHCCCCEEEEECCCCCEEECCCEEEEEEEEECC EANPQNVNKQFDTDTPEHLFKLTTRYNFQGPLEKLRVGGNISWQSRMYNDIELLDGGNYR CCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHEECCCCCHHHHCCCCEEEEECCCEE LKQGAYAVTDLMAGYRVNENLNLQLNANNIFDRKYYSTIANSVSYGGDSYGSPRNMMLTA ECCCCHHHHHHHHCEEECCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEE KYTF EECC >Mature Secondary Structure SRPTSPHRFNPSRNLLSMAICMAVMTPALADETREVQDTAPPATLELGATAITSTQLGS CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCEEEECCCCCC TTEGSESYTTGTMATATKLPLTLRETPQAVTVITRQRMDDQAMTSINDVVNATPGLFLDY CCCCCCCEECCCEEEHEECCEEECCCCCEEEHHHHHHCCHHHHHHHHHHHHCCCCEEEEC SNGPGRQAYKARGFNIDNLMYDGIPSGYDGVNVGSQPNLAMFDRVEVVRGATGLVTGAGN CCCCCCCHHEECCCCHHHEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCCC PSAAINLVRKRPLAEQRVTLTGAAGTWDNYRGELDASSPLNDSGTLRGRVVTSYHDANSF CHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCHHHH IDDVDEQHNLFYAVTEADLSDDTTLTLGFSHQKDRTNYFWGSSMIGLDGHHLDLPRSYNP HHHCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCEEEECCEEECCCCCEECCCCCCCC GTSWEDKDQEINTVFAEIRQQLANDWKLQVNANYSEQNALFSGSYQSRWVNDTLARTVYQ CCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEECCCCCCHHHHHHHHHHHH SKADENQAGLDAFFSGPFEAFGRSHELVVGASKRIYDLTTHNYSPYDTNWPINAGKPDFV HCCCCCCCCCHHHHCCCHHHHCCCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCEE HTNNTREVTTQDGVYLTTRLSLADPLKLILGGRLDWYDYDNRDGDGDYKVTRNVTRYAGL ECCCCCEEEECCCEEEEEEECCCCCHHHHHCCCEEECCCCCCCCCCCEEEECCHHHHEEE IYELDDHHSVYASYSDIFTPQSNKGTSGNPVKPIVGKNYEVGIKGEYLGGALNASLAVFR EEEECCCCEEEEEHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCEEEEEE VDQENRAVQVFVPNCPQSSCYEASGEIRSQGIDFELQGALTDNWQIGGGYTYARTHTIKD ECCCCCEEEEEECCCCCCCHHHCCCHHHHCCCCEEEEECCCCCEEECCCEEEEEEEEECC EANPQNVNKQFDTDTPEHLFKLTTRYNFQGPLEKLRVGGNISWQSRMYNDIELLDGGNYR CCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHEECCCCCHHHHCCCCEEEEECCCEE LKQGAYAVTDLMAGYRVNENLNLQLNANNIFDRKYYSTIANSVSYGGDSYGSPRNMMLTA ECCCCHHHHHHHHCEEECCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEE KYTF EECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8335619; 8918232; 10984043 [H]