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The map label for this gene is yhjC [H]

Identifier: 77458663

GI number: 77458663

Start: 2791335

End: 2792231

Strand: Reverse

Name: yhjC [H]

Synonym: Pfl01_2438

Alternate gene names: 77458663

Gene position: 2792231-2791335 (Counterclockwise)

Preceding gene: 77458665

Following gene: 77458662

Centisome position: 43.37

GC content: 63.55

Gene sequence:

>897_bases
ATGAACCAGTTAATGGCGATCCGCACCTTCGCCCGCGTCGTGGAAAGCGGTTCGTTCACCAAAGCCGCCGACTCGCTGAA
CCTGCCGAAAACCACGGTCAGCAAACTGATCGGCCAGCTGGAAAACCACCTCGGCGTGCGCCTGCTGCAACGCACCACCC
GCCGCCTCACCGTCACCGCCGACGGCGCTTCCTATTACCAATTGACCCAACAACTGCTGCATCAACTGGACGACATCGAT
CAAGGCTTCAGCCAGGCCCAAGGCCTGCCGCGCGGCAAAATTCGCGTGGACATCGGCGGCTCGACCGCAACGATGTTGGT
GATCCCCGAACTGCCGAAGTTCTTCGAACGCTATCCGGACATCCAGGTTGATCTGGGCGTCAGCGACCGCCCGGTGGACC
TGATCAGTGAGCGGGTGGACTGCGTGATTCGCGGCGGCCCGCTGACCGAACAAACCCTGGCAGTGCGCCGCCTCGGCGAA
GTGTCCTGGACCACCTGCGCCACGCCCGATTATCTGCAACGCCACGGCACCCCGAGCCACCCGCTCGACCTGGCCAGCCA
TCAGCTGATCGCCTACCGCTCGGCCTCCACCGGGCGCATCCTGCCGTCGAACTTCCAGCGCAACGGCGAACGCCACCAGA
TCGAAGGCAAAGGCCTGATCAGCGTCAACGAGAGCAACGCGCACCTGGCGGCCGGGCTCGCCGGACTGGGGATCATCCAC
ACCTTCAGCTACACGGTCAGGACCGCCATCGAGCGCGGCGAACTGGTGCCGATCCTCGAGGACTGGCGCCCGCCGGCCTA
TCCGTTTCATGTGCTGTACCCGCCAAACCGACATTTGAGCAATCGGGTGCGGGTGTTTATCGATTGGCTGGTGGAGCGGT
TTGCGCAGGTTGATTGA

Upstream 100 bases:

>100_bases
TTAGGCCGATCGATTGAATTGAAAAATCCGCAAAATCGGTTTTGTTTGTGCACAGACATGCACAATACTCAGCCGTGTCC
AATCCACTGAGCCCGAATCA

Downstream 100 bases:

>100_bases
CGTACTGCGGAAGCATTGCTGACTTTTACGCAAAACACCTTTGACCCAGGGCCGGTTCTTCTCATGCCCGTTGCCACCGA
TACTGGCGGCCATTGACAGT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 298

Protein sequence:

>298_residues
MNQLMAIRTFARVVESGSFTKAADSLNLPKTTVSKLIGQLENHLGVRLLQRTTRRLTVTADGASYYQLTQQLLHQLDDID
QGFSQAQGLPRGKIRVDIGGSTATMLVIPELPKFFERYPDIQVDLGVSDRPVDLISERVDCVIRGGPLTEQTLAVRRLGE
VSWTTCATPDYLQRHGTPSHPLDLASHQLIAYRSASTGRILPSNFQRNGERHQIEGKGLISVNESNAHLAAGLAGLGIIH
TFSYTVRTAIERGELVPILEDWRPPAYPFHVLYPPNRHLSNRVRVFIDWLVERFAQVD

Sequences:

>Translated_298_residues
MNQLMAIRTFARVVESGSFTKAADSLNLPKTTVSKLIGQLENHLGVRLLQRTTRRLTVTADGASYYQLTQQLLHQLDDID
QGFSQAQGLPRGKIRVDIGGSTATMLVIPELPKFFERYPDIQVDLGVSDRPVDLISERVDCVIRGGPLTEQTLAVRRLGE
VSWTTCATPDYLQRHGTPSHPLDLASHQLIAYRSASTGRILPSNFQRNGERHQIEGKGLISVNESNAHLAAGLAGLGIIH
TFSYTVRTAIERGELVPILEDWRPPAYPFHVLYPPNRHLSNRVRVFIDWLVERFAQVD
>Mature_298_residues
MNQLMAIRTFARVVESGSFTKAADSLNLPKTTVSKLIGQLENHLGVRLLQRTTRRLTVTADGASYYQLTQQLLHQLDDID
QGFSQAQGLPRGKIRVDIGGSTATMLVIPELPKFFERYPDIQVDLGVSDRPVDLISERVDCVIRGGPLTEQTLAVRRLGE
VSWTTCATPDYLQRHGTPSHPLDLASHQLIAYRSASTGRILPSNFQRNGERHQIEGKGLISVNESNAHLAAGLAGLGIIH
TFSYTVRTAIERGELVPILEDWRPPAYPFHVLYPPNRHLSNRVRVFIDWLVERFAQVD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=293, Percent_Identity=40.2730375426621, Blast_Score=211, Evalue=4e-56,
Organism=Escherichia coli, GI1786401, Length=284, Percent_Identity=33.8028169014084, Blast_Score=166, Evalue=1e-42,
Organism=Escherichia coli, GI1789639, Length=301, Percent_Identity=30.8970099667774, Blast_Score=146, Evalue=2e-36,
Organism=Escherichia coli, GI1787128, Length=283, Percent_Identity=29.3286219081272, Blast_Score=138, Evalue=4e-34,
Organism=Escherichia coli, GI1787589, Length=290, Percent_Identity=27.2413793103448, Blast_Score=132, Evalue=4e-32,
Organism=Escherichia coli, GI87081978, Length=293, Percent_Identity=30.7167235494881, Blast_Score=116, Evalue=1e-27,
Organism=Escherichia coli, GI1789440, Length=298, Percent_Identity=26.510067114094, Blast_Score=104, Evalue=9e-24,
Organism=Escherichia coli, GI1789173, Length=292, Percent_Identity=26.7123287671233, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1786448, Length=300, Percent_Identity=26, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1788706, Length=295, Percent_Identity=23.728813559322, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI157672245, Length=119, Percent_Identity=31.9327731092437, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1787601, Length=131, Percent_Identity=29.7709923664122, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1786713, Length=275, Percent_Identity=27.2727272727273, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1788748, Length=136, Percent_Identity=31.6176470588235, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33293; Mature: 33293

Theoretical pI: Translated: 8.67; Mature: 8.67

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQLMAIRTFARVVESGSFTKAADSLNLPKTTVSKLIGQLENHLGVRLLQRTTRRLTVTA
CCCHHHHHHHHHHHHCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEE
DGASYYQLTQQLLHQLDDIDQGFSQAQGLPRGKIRVDIGGSTATMLVIPELPKFFERYPD
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEEEEECCHHHHHHHCCC
IQVDLGVSDRPVDLISERVDCVIRGGPLTEQTLAVRRLGEVSWTTCATPDYLQRHGTPSH
EEEECCCCCCCHHHHHHHHCEEEECCCCCHHHHHHHHHCCCCCEECCCHHHHHHCCCCCC
PLDLASHQLIAYRSASTGRILPSNFQRNGERHQIEGKGLISVNESNAHLAAGLAGLGIIH
CHHHHCCEEEEEECCCCCCCCCCHHHCCCCEEEECCCEEEEECCCCCHHHHHHHHHHHHH
TFSYTVRTAIERGELVPILEDWRPPAYPFHVLYPPNRHLSNRVRVFIDWLVERFAQVD
HHHHHHHHHHHCCCCCCHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNQLMAIRTFARVVESGSFTKAADSLNLPKTTVSKLIGQLENHLGVRLLQRTTRRLTVTA
CCCHHHHHHHHHHHHCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEE
DGASYYQLTQQLLHQLDDIDQGFSQAQGLPRGKIRVDIGGSTATMLVIPELPKFFERYPD
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEEEEECCHHHHHHHCCC
IQVDLGVSDRPVDLISERVDCVIRGGPLTEQTLAVRRLGEVSWTTCATPDYLQRHGTPSH
EEEECCCCCCCHHHHHHHHCEEEECCCCCHHHHHHHHHCCCCCEECCCHHHHHHCCCCCC
PLDLASHQLIAYRSASTGRILPSNFQRNGERHQIEGKGLISVNESNAHLAAGLAGLGIIH
CHHHHCCEEEEEECCCCCCCCCCHHHCCCCEEEECCCEEEEECCCCCHHHHHHHHHHHHH
TFSYTVRTAIERGELVPILEDWRPPAYPFHVLYPPNRHLSNRVRVFIDWLVERFAQVD
HHHHHHHHHHHCCCCCCHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]