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The map label for this gene is ydcN [H]

Identifier: 77458573

GI number: 77458573

Start: 2706796

End: 2707443

Strand: Reverse

Name: ydcN [H]

Synonym: Pfl01_2346

Alternate gene names: 77458573

Gene position: 2707443-2706796 (Counterclockwise)

Preceding gene: 77458574

Following gene: 77458572

Centisome position: 42.05

GC content: 62.5

Gene sequence:

>648_bases
GTGAACGCGCGTGAACCCTCGCGCTTTCTGGCGAGCGCCGATGAACCTGTGCTGGACCTGAACAACCTCGAATCCCTGGA
AGAAGACCCGATCTGTGAACGCGTCGCGCAGAACCTGCAACGTCTGCGCGGCAAGCGGCATCTGTCGCTCGATGCCCTCG
CCCGCCAGTGCGGCGTGAGCCGGGCGATGCTGGCGCAGATCGAATCCGGGCGCAGCGTGCCGTCGATCAAGGTGCTGTGC
AAAATCGCCAAGGGTTTGAAGGTGTCGGTGGCAGCGTTTCTGGAACATCGCGCGCTTGAAGGCGTGGCCGTGTTGTCGGC
GAGCCAGAGCAAGCGACTGGTGAGTGCCAGCGGCGCGTTTGTCAGTCGCGCCTTGTTTCCATTTGACGTGGCGCGCCAAT
CGGAATTCTACGAACTGCGTCTGAGCCCCTTGGGCGAAGATCAATCCGAAGGCCACGGCCCCGGCGTGCAGGAAAATCTG
GTGGTGGCTCAGGGCGTGCTGGAGATCAGCGTCAACGACGAGCGCTATCTGCTGTCGACGGGCGACTCGATTCTGTTTTA
CGCCGACCAGCCCCATCGTTACCGCAACCCCGCCGACAGTGAAGCGGTGGCGTATCTGGTGGTGACTTACCCCGAACGCC
TGGACTGA

Upstream 100 bases:

>100_bases
AGCAACAGGCCCGGCTGATGTGGGAAATGTATGCGCGCAATGCCGGTTATCAGGCTTGGCAGTGGGTGCAGGCCGCGCGT
TCCAGCGAGACGCGTCAAGC

Downstream 100 bases:

>100_bases
CAAACAGACAACAAAAAGCCCGACCGGGAATTTCCCGGTCGGGCTTTTTCATGCGCTGGCGAAAATCAGCAGGTGCAGCA
CATCATCGGCATGCCGTTGC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 215; Mature: 215

Protein sequence:

>215_residues
MNAREPSRFLASADEPVLDLNNLESLEEDPICERVAQNLQRLRGKRHLSLDALARQCGVSRAMLAQIESGRSVPSIKVLC
KIAKGLKVSVAAFLEHRALEGVAVLSASQSKRLVSASGAFVSRALFPFDVARQSEFYELRLSPLGEDQSEGHGPGVQENL
VVAQGVLEISVNDERYLLSTGDSILFYADQPHRYRNPADSEAVAYLVVTYPERLD

Sequences:

>Translated_215_residues
MNAREPSRFLASADEPVLDLNNLESLEEDPICERVAQNLQRLRGKRHLSLDALARQCGVSRAMLAQIESGRSVPSIKVLC
KIAKGLKVSVAAFLEHRALEGVAVLSASQSKRLVSASGAFVSRALFPFDVARQSEFYELRLSPLGEDQSEGHGPGVQENL
VVAQGVLEISVNDERYLLSTGDSILFYADQPHRYRNPADSEAVAYLVVTYPERLD
>Mature_215_residues
MNAREPSRFLASADEPVLDLNNLESLEEDPICERVAQNLQRLRGKRHLSLDALARQCGVSRAMLAQIESGRSVPSIKVLC
KIAKGLKVSVAAFLEHRALEGVAVLSASQSKRLVSASGAFVSRALFPFDVARQSEFYELRLSPLGEDQSEGHGPGVQENL
VVAQGVLEISVNDERYLLSTGDSILFYADQPHRYRNPADSEAVAYLVVTYPERLD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787704, Length=177, Percent_Identity=32.7683615819209, Blast_Score=94, Evalue=1e-20,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR014710 [H]

Pfam domain/function: PF07883 Cupin_2; PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 23637; Mature: 23637

Theoretical pI: Translated: 5.37; Mature: 5.37

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAREPSRFLASADEPVLDLNNLESLEEDPICERVAQNLQRLRGKRHLSLDALARQCGVS
CCCCCCHHHHHCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCH
RAMLAQIESGRSVPSIKVLCKIAKGLKVSVAAFLEHRALEGVAVLSASQSKRLVSASGAF
HHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCHHEEECCCCCHHHHHCCHH
VSRALFPFDVARQSEFYELRLSPLGEDQSEGHGPGVQENLVVAQGVLEISVNDERYLLST
HHHHHCCHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEECCEEEEEECCCEEEEEC
GDSILFYADQPHRYRNPADSEAVAYLVVTYPERLD
CCEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCC
>Mature Secondary Structure
MNAREPSRFLASADEPVLDLNNLESLEEDPICERVAQNLQRLRGKRHLSLDALARQCGVS
CCCCCCHHHHHCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCH
RAMLAQIESGRSVPSIKVLCKIAKGLKVSVAAFLEHRALEGVAVLSASQSKRLVSASGAF
HHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCHHEEECCCCCHHHHHCCHH
VSRALFPFDVARQSEFYELRLSPLGEDQSEGHGPGVQENLVVAQGVLEISVNDERYLLST
HHHHHCCHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEECCEEEEEECCCEEEEEC
GDSILFYADQPHRYRNPADSEAVAYLVVTYPERLD
CCEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]