| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is dipZ [H]
Identifier: 77458316
GI number: 77458316
Start: 2375007
End: 2376221
Strand: Direct
Name: dipZ [H]
Synonym: Pfl01_2089
Alternate gene names: 77458316
Gene position: 2375007-2376221 (Clockwise)
Preceding gene: 77458315
Following gene: 77458318
Centisome position: 36.89
GC content: 63.05
Gene sequence:
>1215_bases ATGTTTCTCATCGCTTTCCTGGGCGGTCTGTTGACTGTCCTCAGTCCGTGCATCCTGCCGGTGGTGCCGTTTCTGTTCGC CGGTGCCGACCGCACCCGTTCTTCGATCCTGCTGACCCTCGGCGGCATGGCCCTGACCTTTGCCCTGATCTCCAGCCTGG CGGTGGTCAGCAGCGAGTGGGTGATTGAGGCCAGCAACACCGGTCGCTACATTGCGCTGGCGGTGATGGTGCTGTTTGCG CTGTCGCTGATTTCCGCGCGCATCGGTGACTGGCTGGCGCGGCCCTTCGTGCTGCTGGGCAATCGCCTCGACCCCGACGC CCGGAAAAAGACCGGACCCATGGCCTCGATCATGATTGGCGTGGCCACCGGTCTACTGTGGGCGCCGTGCGCCGGCCCGA TCCTCGGCGTGATCCTCACCGGTGCCATGCTGCAAGGCGCTAGCGCTCAGACCAGCCTGTTGCTGCTGGCCTACGGTGCG GGCAGTGCGCTGTCGCTGGGGACGCTGATTTTCGCCGGTCGCGGTCTGGTCAATCGGCTGAAACCGTCGATTCCGTTCAC CGGCTGGTTCCGCCGCGGCGCGGGTGTTGCGGTGCTGGCGACGGCGGCGGTGATCGCCACCGGTGCCGACAACCTGCTGC TGGCCAACACCTCGTCCCAAGGCGTGGCATCGGTAGAGAAAAGCGTGCTGGAAAACGTGCCGAAGGTGGTGGACTACTTT GTCAGCAAAGTCCGTGCAGACTCGACTGAAGACGAGGCGAGCAAAGGCGCGATGCCATCGCTGTCCGGCGCGGTGCAGTG GCTGAACTCTCCGGAACTGAGCGCTGAGTCCCTGCGCGGCAAAGTGGTGCTGGTGGACTTCTGGACCTACGACTGCATCA ACTGCCAGCACACCCTGCCGTACGTGAAGGAGTGGGAGAAGAAGTACGGCAAGGACGGTCTGGTGGTGATCGGCGTGCAC ACCCCGGAATACGGTTACGAGCGGATCATCGACAACGTCAAGGATCAAGTGCACAAGCTCGGCATCACCTACCCGGTGGC CATCGACAACAACTACGCGATCTGGCGCAACTTCGATAACCAGTACTGGCCGGCGCATTACCTGGTCGACGCCAAGGGCC AGGTGCGTTACACCCACTTTGGCGAAGGCAGTTACCAGGCGCAGGAGCAGATGATTCAGCAACTGCTCAAGGAGGCCAAG GCGCCGGCTGCGTAA
Upstream 100 bases:
>100_bases GGCTGGACAGCCAGACGGCTTGAGGATTGAAGGGGGCTGCCCGTAACGGGCGCCCCCCGAACCACTCAACAGACCACCCC TCATTCAAAAGGTGAACCTC
Downstream 100 bases:
>100_bases ACCGCAAAACTCAATGGCTCACAGGTCGCGCACCATGAGCCATTGTTCGTTGCCCCAGGCGTGAAAACGCTCCAGCACCG TCCAGCCGCGTTTGGCGTAA
Product: cytochrome c biogenesis protein, transmembrane region
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 404; Mature: 404
Protein sequence:
>404_residues MFLIAFLGGLLTVLSPCILPVVPFLFAGADRTRSSILLTLGGMALTFALISSLAVVSSEWVIEASNTGRYIALAVMVLFA LSLISARIGDWLARPFVLLGNRLDPDARKKTGPMASIMIGVATGLLWAPCAGPILGVILTGAMLQGASAQTSLLLLAYGA GSALSLGTLIFAGRGLVNRLKPSIPFTGWFRRGAGVAVLATAAVIATGADNLLLANTSSQGVASVEKSVLENVPKVVDYF VSKVRADSTEDEASKGAMPSLSGAVQWLNSPELSAESLRGKVVLVDFWTYDCINCQHTLPYVKEWEKKYGKDGLVVIGVH TPEYGYERIIDNVKDQVHKLGITYPVAIDNNYAIWRNFDNQYWPAHYLVDAKGQVRYTHFGEGSYQAQEQMIQQLLKEAK APAA
Sequences:
>Translated_404_residues MFLIAFLGGLLTVLSPCILPVVPFLFAGADRTRSSILLTLGGMALTFALISSLAVVSSEWVIEASNTGRYIALAVMVLFA LSLISARIGDWLARPFVLLGNRLDPDARKKTGPMASIMIGVATGLLWAPCAGPILGVILTGAMLQGASAQTSLLLLAYGA GSALSLGTLIFAGRGLVNRLKPSIPFTGWFRRGAGVAVLATAAVIATGADNLLLANTSSQGVASVEKSVLENVPKVVDYF VSKVRADSTEDEASKGAMPSLSGAVQWLNSPELSAESLRGKVVLVDFWTYDCINCQHTLPYVKEWEKKYGKDGLVVIGVH TPEYGYERIIDNVKDQVHKLGITYPVAIDNNYAIWRNFDNQYWPAHYLVDAKGQVRYTHFGEGSYQAQEQMIQQLLKEAK APAA >Mature_404_residues MFLIAFLGGLLTVLSPCILPVVPFLFAGADRTRSSILLTLGGMALTFALISSLAVVSSEWVIEASNTGRYIALAVMVLFA LSLISARIGDWLARPFVLLGNRLDPDARKKTGPMASIMIGVATGLLWAPCAGPILGVILTGAMLQGASAQTSLLLLAYGA GSALSLGTLIFAGRGLVNRLKPSIPFTGWFRRGAGVAVLATAAVIATGADNLLLANTSSQGVASVEKSVLENVPKVVDYF VSKVRADSTEDEASKGAMPSLSGAVQWLNSPELSAESLRGKVVLVDFWTYDCINCQHTLPYVKEWEKKYGKDGLVVIGVH TPEYGYERIIDNVKDQVHKLGITYPVAIDNNYAIWRNFDNQYWPAHYLVDAKGQVRYTHFGEGSYQAQEQMIQQLLKEAK APAA
Specific function: Unknown
COG id: COG0526
COG function: function code OC; Thiol-disulfide isomerase and thioredoxins
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 thioredoxin domain [H]
Homologues:
Organism=Homo sapiens, GI42476013, Length=130, Percent_Identity=35.3846153846154, Blast_Score=101, Evalue=1e-21, Organism=Drosophila melanogaster, GI116007528, Length=188, Percent_Identity=29.7872340425532, Blast_Score=89, Evalue=4e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000866 - InterPro: IPR003834 - InterPro: IPR017936 - InterPro: IPR012336 - InterPro: IPR012335 [H]
Pfam domain/function: PF00578 AhpC-TSA; PF02683 DsbD [H]
EC number: NA
Molecular weight: Translated: 43425; Mature: 43425
Theoretical pI: Translated: 8.28; Mature: 8.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFLIAFLGGLLTVLSPCILPVVPFLFAGADRTRSSILLTLGGMALTFALISSLAVVSSEW CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCE VIEASNTGRYIALAVMVLFALSLISARIGDWLARPFVLLGNRLDPDARKKTGPMASIMIG EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCHHHHHCCCHHHHHHH VATGLLWAPCAGPILGVILTGAMLQGASAQTSLLLLAYGAGSALSLGTLIFAGRGLVNRL HHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHCCHHHHHH KPSIPFTGWFRRGAGVAVLATAAVIATGADNLLLANTSSQGVASVEKSVLENVPKVVDYF CCCCCCCHHHHCCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHH VSKVRADSTEDEASKGAMPSLSGAVQWLNSPELSAESLRGKVVLVDFWTYDCINCQHTLP HHHHCCCCCHHHHHCCCCCCHHHHHHHCCCCCCCHHHHCCCEEEEEECCCCCCCCCCCCH YVKEWEKKYGKDGLVVIGVHTPEYGYERIIDNVKDQVHKLGITYPVAIDNNYAIWRNFDN HHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEECCCC QYWPAHYLVDAKGQVRYTHFGEGSYQAQEQMIQQLLKEAKAPAA CCCCEEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MFLIAFLGGLLTVLSPCILPVVPFLFAGADRTRSSILLTLGGMALTFALISSLAVVSSEW CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCE VIEASNTGRYIALAVMVLFALSLISARIGDWLARPFVLLGNRLDPDARKKTGPMASIMIG EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCHHHHHCCCHHHHHHH VATGLLWAPCAGPILGVILTGAMLQGASAQTSLLLLAYGAGSALSLGTLIFAGRGLVNRL HHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHCCHHHHHH KPSIPFTGWFRRGAGVAVLATAAVIATGADNLLLANTSSQGVASVEKSVLENVPKVVDYF CCCCCCCHHHHCCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHH VSKVRADSTEDEASKGAMPSLSGAVQWLNSPELSAESLRGKVVLVDFWTYDCINCQHTLP HHHHCCCCCHHHHHCCCCCCHHHHHHHCCCCCCCHHHHCCCEEEEEECCCCCCCCCCCCH YVKEWEKKYGKDGLVVIGVHTPEYGYERIIDNVKDQVHKLGITYPVAIDNNYAIWRNFDN HHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEECCCC QYWPAHYLVDAKGQVRYTHFGEGSYQAQEQMIQQLLKEAKAPAA CCCCEEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 12788972 [H]