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The map label for this gene is ypmQ [H]

Identifier: 77458204

GI number: 77458204

Start: 2258878

End: 2259528

Strand: Direct

Name: ypmQ [H]

Synonym: Pfl01_1977

Alternate gene names: 77458204

Gene position: 2258878-2259528 (Clockwise)

Preceding gene: 77458203

Following gene: 77458205

Centisome position: 35.08

GC content: 62.67

Gene sequence:

>651_bases
ATGAACCGATTTGCATCCCGTGGCCTGCTGACCCTGTGCCTGTTGGCCGTCGGTATCCAGCAGGCCAGCGCCCACTCGGC
GGACGAGCATGCCGGCCACACCGCACCGGCCGCCAACAGCCAGGAGCACGCCCAGGTCAAGTTCGCCGACGTGCCGCTGC
TCGACCAGAACGGCAAGACCGTGCACCTGGAGCAGGATCTGGTGCACAACAAGATCGTGGTCATGAGTTTCATCTACACC
AGTTGCACCACGGTCTGCCCGGTGGTCTCGTCAATCATGGGCAAGGTGCAGAAACAGCTCGGTGCCCGGGTCGGCGCGGA
AGTGCAGCTGGTGTCGATCAGCATCGACCCGCAGCGCGACGACCCGAAACGCTTGCAGGATTACGCCCGCACCTTCCAGA
AAGGCCCGGGCTGGAGCTGGCTGACCGGTTCGCCGCAATCAATCAGCGCCACCCTCAAGGGCCTCGGCAGTTTCAGCGGC
GACTTCAAGAATCACCAGCCGCTGATCCTCGTCGGTGACGGCAACAGTCGCCACTGGACGCGCTATTACGGCTTCACCGA
CCCGGCATTGCTGGCCAAGGAAGTCGAAAAACTCAGCGGCCTGCGCACTCACGCTAAACACACCGCGATTGCCATGGAGC
AACAACCATGA

Upstream 100 bases:

>100_bases
CTGCACGTGCGCGCGGCCTCGCTGGGCGCCGGTTTCGACGACAAGACCTTTGCCAGTGTCCGGGTGCTGCCCGGCCAGAC
TCAGTGACGAGGAAACGACC

Downstream 100 bases:

>100_bases
GAACCCTGGACTGGCTCACCCTGACAGTGTGTTTCTGGATTTTCAGCGCCATGGCCCTGGCTCACGAAGGCCACGAACAA
CCGGCACCGGCAACGACCAG

Product: electron transport protein SCO1/SenC

Products: NA

Alternate protein names: BsSco [H]

Number of amino acids: Translated: 216; Mature: 216

Protein sequence:

>216_residues
MNRFASRGLLTLCLLAVGIQQASAHSADEHAGHTAPAANSQEHAQVKFADVPLLDQNGKTVHLEQDLVHNKIVVMSFIYT
SCTTVCPVVSSIMGKVQKQLGARVGAEVQLVSISIDPQRDDPKRLQDYARTFQKGPGWSWLTGSPQSISATLKGLGSFSG
DFKNHQPLILVGDGNSRHWTRYYGFTDPALLAKEVEKLSGLRTHAKHTAIAMEQQP

Sequences:

>Translated_216_residues
MNRFASRGLLTLCLLAVGIQQASAHSADEHAGHTAPAANSQEHAQVKFADVPLLDQNGKTVHLEQDLVHNKIVVMSFIYT
SCTTVCPVVSSIMGKVQKQLGARVGAEVQLVSISIDPQRDDPKRLQDYARTFQKGPGWSWLTGSPQSISATLKGLGSFSG
DFKNHQPLILVGDGNSRHWTRYYGFTDPALLAKEVEKLSGLRTHAKHTAIAMEQQP
>Mature_216_residues
MNRFASRGLLTLCLLAVGIQQASAHSADEHAGHTAPAANSQEHAQVKFADVPLLDQNGKTVHLEQDLVHNKIVVMSFIYT
SCTTVCPVVSSIMGKVQKQLGARVGAEVQLVSISIDPQRDDPKRLQDYARTFQKGPGWSWLTGSPQSISATLKGLGSFSG
DFKNHQPLILVGDGNSRHWTRYYGFTDPALLAKEVEKLSGLRTHAKHTAIAMEQQP

Specific function: Neccessary for insertion of copper into the active site of cytochrome c oxidase. May play a role in copper homeostasis or redox signaling [H]

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cell membrane; Lipid-anchor; Cytoplasmic side [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 thioredoxin domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR017936
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 23539; Mature: 23539

Theoretical pI: Translated: 8.84; Mature: 8.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRFASRGLLTLCLLAVGIQQASAHSADEHAGHTAPAANSQEHAQVKFADVPLLDQNGKT
CCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCEEEEECCCEECCCCCE
VHLEQDLVHNKIVVMSFIYTSCTTVCPVVSSIMGKVQKQLGARVGAEVQLVSISIDPQRD
EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCC
DPKRLQDYARTFQKGPGWSWLTGSPQSISATLKGLGSFSGDFKNHQPLILVGDGNSRHWT
CHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCEE
RYYGFTDPALLAKEVEKLSGLRTHAKHTAIAMEQQP
EECCCCCHHHHHHHHHHHHHHHHHHHHHEEEECCCC
>Mature Secondary Structure
MNRFASRGLLTLCLLAVGIQQASAHSADEHAGHTAPAANSQEHAQVKFADVPLLDQNGKT
CCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCEEEEECCCEECCCCCE
VHLEQDLVHNKIVVMSFIYTSCTTVCPVVSSIMGKVQKQLGARVGAEVQLVSISIDPQRD
EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCC
DPKRLQDYARTFQKGPGWSWLTGSPQSISATLKGLGSFSGDFKNHQPLILVGDGNSRHWT
CHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCEE
RYYGFTDPALLAKEVEKLSGLRTHAKHTAIAMEQQP
EECCCCCHHHHHHHHHHHHHHHHHHHHHEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]