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The map label for this gene is pocR [H]

Identifier: 77458187

GI number: 77458187

Start: 2236710

End: 2237141

Strand: Reverse

Name: pocR [H]

Synonym: Pfl01_1960

Alternate gene names: 77458187

Gene position: 2237141-2236710 (Counterclockwise)

Preceding gene: 77458195

Following gene: 77458185

Centisome position: 34.75

GC content: 62.73

Gene sequence:

>432_bases
GTGCGTTCCCCACCGACACGGACCTTGGCCATGGCTCACTCACAGCAAACCGTCGCCCTCGCCCCTGCCAGCGAACCCCG
CAAGCCCAGCACCGGCGGCCTCAGCCCGCAACGGGAACGGCTGGTGAAACAGCTGATTCTCGACCGCCTCGGCGACAGCC
TTGAAGTCACCGAACTGGCCAACGCCTGCGCACTCTCGCGCAGCCATTTTTCCCGGGCGTTCAAATGCAGCACAGGGTAC
TCGCCGCAAGACTGGATCCGCACCCAGCGCATTGCCCGCGCCAAACTGTTGATCCAGCACACCAGCCACAGCCTCACGCA
GATCAGCCTGGAATGCGGTTTCTGCGATCAGGCGCACTTCTGCCACATCTTCACCCGCAGCGAAGGGATCAACCCGTTTG
CGTGGCGTTGTCAGGTCATGAAAAACCGCTGA

Upstream 100 bases:

>100_bases
GTGGAATTAACAACGTTTAACTCGTCAGCACCCGCCCCTCGCCAAACAATGAATCCCTCTGCGCAGCGTTGTTTTTTTGA
CCTGAGGGAAAGCGCTGACC

Downstream 100 bases:

>100_bases
GGCGGTTTCACCCTCGAGCCATCCGCTGGGCCAGTCGCGCCACCCGCTCGCCCAGGTGCGCAGCGGTTTGTTGGTCTTCC
AGCGGCGGCGCCTGCTCGGG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 143; Mature: 143

Protein sequence:

>143_residues
MRSPPTRTLAMAHSQQTVALAPASEPRKPSTGGLSPQRERLVKQLILDRLGDSLEVTELANACALSRSHFSRAFKCSTGY
SPQDWIRTQRIARAKLLIQHTSHSLTQISLECGFCDQAHFCHIFTRSEGINPFAWRCQVMKNR

Sequences:

>Translated_143_residues
MRSPPTRTLAMAHSQQTVALAPASEPRKPSTGGLSPQRERLVKQLILDRLGDSLEVTELANACALSRSHFSRAFKCSTGY
SPQDWIRTQRIARAKLLIQHTSHSLTQISLECGFCDQAHFCHIFTRSEGINPFAWRCQVMKNR
>Mature_143_residues
MRSPPTRTLAMAHSQQTVALAPASEPRKPSTGGLSPQRERLVKQLILDRLGDSLEVTELANACALSRSHFSRAFKCSTGY
SPQDWIRTQRIARAKLLIQHTSHSLTQISLECGFCDQAHFCHIFTRSEGINPFAWRCQVMKNR

Specific function: Positive regulatory protein of pdu and cob operons [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR018771 [H]

Pfam domain/function: PF10114 Hist_Kin_Sens; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 16092; Mature: 16092

Theoretical pI: Translated: 10.37; Mature: 10.37

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
4.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSPPTRTLAMAHSQQTVALAPASEPRKPSTGGLSPQRERLVKQLILDRLGDSLEVTELA
CCCCCCCEEEEECCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHH
NACALSRSHFSRAFKCSTGYSPQDWIRTQRIARAKLLIQHTSHSLTQISLECGFCDQAHF
HHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCE
CHIFTRSEGINPFAWRCQVMKNR
EEEEECCCCCCHHHHHEEEECCC
>Mature Secondary Structure
MRSPPTRTLAMAHSQQTVALAPASEPRKPSTGGLSPQRERLVKQLILDRLGDSLEVTELA
CCCCCCCEEEEECCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHH
NACALSRSHFSRAFKCSTGYSPQDWIRTQRIARAKLLIQHTSHSLTQISLECGFCDQAHF
HHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCE
CHIFTRSEGINPFAWRCQVMKNR
EEEEECCCCCCHHHHHEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8071226; 9352910; 11677609; 8501034 [H]