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The map label for this gene is rbsD

Identifier: 77458151

GI number: 77458151

Start: 2196572

End: 2196976

Strand: Direct

Name: rbsD

Synonym: Pfl01_1924

Alternate gene names: 77458151

Gene position: 2196572-2196976 (Clockwise)

Preceding gene: 77458150

Following gene: 77458152

Centisome position: 34.12

GC content: 60.74

Gene sequence:

>405_bases
ATGAAAAAGACTCCTTTGCTCAATGTCGCCCTGTCGCGGCTGATTGCCTCCCTCGGCCACGGCGACGTGGTCGTGATCGG
TGATGCCGGCCTGCCGGTGCCGCCGGGTGTCGAGCTGATCGACCTAGCGTTGACGCACGGCGTGCCGGATTTCGTCAGCA
CCCTGAAAGTCGTGCTCAGCGAGATGCAGGTGGAAAGCCACGCGCTGGCCAAGGAGATTTTCGACAAGCAACCGACCGCG
CTGTCCACGCTGGACGAGCTGAATGACGAAGGCTCGCTGGGGCGGCGTGACCTGCTCAGTCACGAGCAATTCAAAGTACT
CAGCCGACAGGCACGAGCGATTGTTCGTACGGGAGAATGCCAGCCGTACTGCAACATCGTGCTGGTGGCTGGGGTTACGT
TCTAA

Upstream 100 bases:

>100_bases
CCATTCGTTTCGGGCAGGTCGCTGCGGCCCTGTCGGTTACCCGGGCAGGTGCCCAGCCGTCCATTCCCACCACCTCCGAC
GTACAGGCATTCAAACCCGC

Downstream 100 bases:

>100_bases
ACAGGGTTCGCCCCTTTTGATTTCATCTGCACAAGGAATGCGCCATGCACCGCTATGCTCAAAAATTGCATCAATTGATT
CGGGGGCTGCTGCTTTTGTC

Product: D-ribose pyranase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 134; Mature: 134

Protein sequence:

>134_residues
MKKTPLLNVALSRLIASLGHGDVVVIGDAGLPVPPGVELIDLALTHGVPDFVSTLKVVLSEMQVESHALAKEIFDKQPTA
LSTLDELNDEGSLGRRDLLSHEQFKVLSRQARAIVRTGECQPYCNIVLVAGVTF

Sequences:

>Translated_134_residues
MKKTPLLNVALSRLIASLGHGDVVVIGDAGLPVPPGVELIDLALTHGVPDFVSTLKVVLSEMQVESHALAKEIFDKQPTA
LSTLDELNDEGSLGRRDLLSHEQFKVLSRQARAIVRTGECQPYCNIVLVAGVTF
>Mature_134_residues
MKKTPLLNVALSRLIASLGHGDVVVIGDAGLPVPPGVELIDLALTHGVPDFVSTLKVVLSEMQVESHALAKEIFDKQPTA
LSTLDELNDEGSLGRRDLLSHEQFKVLSRQARAIVRTGECQPYCNIVLVAGVTF

Specific function: Catalyzes the interconversion of beta-pyran and beta- furan forms of D-ribose

COG id: COG1869

COG function: function code G; ABC-type ribose transport system, auxiliary component

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbsD / fucU family. RbsD subfamily

Homologues:

Organism=Escherichia coli, GI87082327, Length=139, Percent_Identity=46.0431654676259, Blast_Score=124, Evalue=1e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBSD_PSEPF (Q3KEY9)

Other databases:

- EMBL:   CP000094
- RefSeq:   YP_347656.1
- ProteinModelPortal:   Q3KEY9
- SMR:   Q3KEY9
- STRING:   Q3KEY9
- GeneID:   3716310
- GenomeReviews:   CP000094_GR
- KEGG:   pfo:Pfl01_1924
- eggNOG:   COG1869
- HOGENOM:   HBG510403
- OMA:   RAVIRTG
- ProtClustDB:   PRK11797
- BioCyc:   PFLU205922:PFL_1924-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01661
- InterPro:   IPR023064
- InterPro:   IPR007721

Pfam domain/function: PF05025 RbsD_FucU; SSF102546 RbsD_FucU

EC number: NA

Molecular weight: Translated: 14411; Mature: 14411

Theoretical pI: Translated: 5.58; Mature: 5.58

Prosite motif: NA

Important sites: ACT_SITE 20-20 BINDING 28-28 BINDING 101-101

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKTPLLNVALSRLIASLGHGDVVVIGDAGLPVPPGVELIDLALTHGVPDFVSTLKVVLS
CCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHH
EMQVESHALAKEIFDKQPTALSTLDELNDEGSLGRRDLLSHEQFKVLSRQARAIVRTGEC
HHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
QPYCNIVLVAGVTF
CCCCCEEEEECCCC
>Mature Secondary Structure
MKKTPLLNVALSRLIASLGHGDVVVIGDAGLPVPPGVELIDLALTHGVPDFVSTLKVVLS
CCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHH
EMQVESHALAKEIFDKQPTALSTLDELNDEGSLGRRDLLSHEQFKVLSRQARAIVRTGEC
HHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
QPYCNIVLVAGVTF
CCCCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA