| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
Click here to switch to the map view.
The map label for this gene is 77458061
Identifier: 77458061
GI number: 77458061
Start: 2052670
End: 2053461
Strand: Reverse
Name: 77458061
Synonym: Pfl01_1834
Alternate gene names: NA
Gene position: 2053461-2052670 (Counterclockwise)
Preceding gene: 77458062
Following gene: 77458060
Centisome position: 31.89
GC content: 62.5
Gene sequence:
>792_bases ATGACAGCTCTGCCATGGCTCTATCTCGGGCTTCTCAGCCTTGGTTACGGATTGGCGCTGAGTTTCGGCCAGCTCGGCTG GCTGGCGCTGATCTCCATTGCACTGCTGGTTTTCGCCGGTTATGCCGTGCGCCAGCAAACCGTGCCGGTCGGGCGTTATC TCGGGCATGGCCTGTTTATCGTGTTGGCTCTGGCGCTGGCCCTGCACTGGCTGCCGGGCTTCTACAACGGTCGGGCCATC GAGCCGCAGCGCTTCACCGACAATGCCGTGCCGTTCTCGATGTACCTGAATCTCGACAAACCGCTGATTGGCTTCTGGCT GCTGCTGGTCTGCCCATGGATCGTCGCGCGTCGTTCGTTGCGCCTGACCGTCTACGCCACTGCGCTGGCACTGACGTTGA GCGTGATTCTGGCGCTGGGCGGCGCGGTATTGCTGGGTATGATCACCTGGGCGCCGAAATGGCCGGATCAGGCGTGGCTG TGGGTGCTGAACAATCTGCTGCTGGTGACGCTGGTCGAAGAAGCGCTGTTTCGCGGCTATATCCAGGGTGGCCTGAGTCG GCGTTTCCAACACCTGCCCTACGGCGAAAACCTCGCGTTGCTGCTGGCTTCCCTGCTGTTCGGCCTGGTGCATGTGGGCG CCGGCTGGCAATGGGTGTTGCTGGCGAGCCTGGCGGGTGTCGGCTATGGTCTGGCCTACCGTTTTGGCGGGCTCGGCGCG GCGATCGCAACGCATTTTGGCCTGAACCTGCTGCATTTCGGCCTGTTCACCTATCCGATGCTCGCGGGTTGA
Upstream 100 bases:
>100_bases CCGCAGGGCCTGCGAACCGGTTTAGCCCTACACCTTCACTTGTCCCCCCGCCCCCAGCCGTGTAGAAAGCCTGTCCACAA ATCGTGCACAAGGACTTTCC
Downstream 100 bases:
>100_bases AGCAAGGGCCGTTTTGCGACGCCGTACTTATAAATGAAAAAAAATTTCAATAAATGGCCGACCCCGCCGACAACCTTTCA AAGCCTTGCGGATTGAAAAA
Product: abortive infection protein
Products: NA
Alternate protein names: CAAX Amino Terminal Protease Family Protein; CAAX Amino Terminal Protease Family; CAAX Amino Terminal Protease; CAAX Protease Family Protein; Membrane-Associated Protease
Number of amino acids: Translated: 263; Mature: 262
Protein sequence:
>263_residues MTALPWLYLGLLSLGYGLALSFGQLGWLALISIALLVFAGYAVRQQTVPVGRYLGHGLFIVLALALALHWLPGFYNGRAI EPQRFTDNAVPFSMYLNLDKPLIGFWLLLVCPWIVARRSLRLTVYATALALTLSVILALGGAVLLGMITWAPKWPDQAWL WVLNNLLLVTLVEEALFRGYIQGGLSRRFQHLPYGENLALLLASLLFGLVHVGAGWQWVLLASLAGVGYGLAYRFGGLGA AIATHFGLNLLHFGLFTYPMLAG
Sequences:
>Translated_263_residues MTALPWLYLGLLSLGYGLALSFGQLGWLALISIALLVFAGYAVRQQTVPVGRYLGHGLFIVLALALALHWLPGFYNGRAI EPQRFTDNAVPFSMYLNLDKPLIGFWLLLVCPWIVARRSLRLTVYATALALTLSVILALGGAVLLGMITWAPKWPDQAWL WVLNNLLLVTLVEEALFRGYIQGGLSRRFQHLPYGENLALLLASLLFGLVHVGAGWQWVLLASLAGVGYGLAYRFGGLGA AIATHFGLNLLHFGLFTYPMLAG >Mature_262_residues TALPWLYLGLLSLGYGLALSFGQLGWLALISIALLVFAGYAVRQQTVPVGRYLGHGLFIVLALALALHWLPGFYNGRAIE PQRFTDNAVPFSMYLNLDKPLIGFWLLLVCPWIVARRSLRLTVYATALALTLSVILALGGAVLLGMITWAPKWPDQAWLW VLNNLLLVTLVEEALFRGYIQGGLSRRFQHLPYGENLALLLASLLFGLVHVGAGWQWVLLASLAGVGYGLAYRFGGLGAA IATHFGLNLLHFGLFTYPMLAG
Specific function: Unknown
COG id: COG1266
COG function: function code R; Predicted metal-dependent membrane protease
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28779; Mature: 28648
Theoretical pI: Translated: 9.79; Mature: 9.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTALPWLYLGLLSLGYGLALSFGQLGWLALISIALLVFAGYAVRQQTVPVGRYLGHGLFI CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH VLALALALHWLPGFYNGRAIEPQRFTDNAVPFSMYLNLDKPLIGFWLLLVCPWIVARRSL HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHH RLTVYATALALTLSVILALGGAVLLGMITWAPKWPDQAWLWVLNNLLLVTLVEEALFRGY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH IQGGLSRRFQHLPYGENLALLLASLLFGLVHVGAGWQWVLLASLAGVGYGLAYRFGGLGA HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHH AIATHFGLNLLHFGLFTYPMLAG HHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure TALPWLYLGLLSLGYGLALSFGQLGWLALISIALLVFAGYAVRQQTVPVGRYLGHGLFI CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH VLALALALHWLPGFYNGRAIEPQRFTDNAVPFSMYLNLDKPLIGFWLLLVCPWIVARRSL HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHH RLTVYATALALTLSVILALGGAVLLGMITWAPKWPDQAWLWVLNNLLLVTLVEEALFRGY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH IQGGLSRRFQHLPYGENLALLLASLLFGLVHVGAGWQWVLLASLAGVGYGLAYRFGGLGA HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHH AIATHFGLNLLHFGLFTYPMLAG HHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA