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The map label for this gene is rraA [C]

Identifier: 77457999

GI number: 77457999

Start: 1971377

End: 1971868

Strand: Direct

Name: rraA [C]

Synonym: Pfl01_1772

Alternate gene names: 77457999

Gene position: 1971377-1971868 (Clockwise)

Preceding gene: 77457998

Following gene: 77458000

Centisome position: 30.62

GC content: 57.72

Gene sequence:

>492_bases
ATGAACCATTACCTTACGCCTGACCTGTGCGACGCCTATCCGGAGCTGGTTCAGGTGCTGGAACCGATGTTCAGCAATTT
CGGCGGCCGTGATTCGTTCGGTGGCGAAATCGTGACCATCAAATGCTTCGAAGACAACTCGCTGGTCAAGGAACAAGCCG
AGCTCAAGGGCAACGGCAAGGTGCTGGTGGTCGATGGCGGTGGCTCGCTGCGCTGCGCACTGCTGGGCGACATGATCGCC
GAGAAAGCCGCGAAAAACGGTTGGGAAGGGCTGGTCATCTACGGCTGCATCCGTGATGTGGACGTCATCGCCCAGACCGA
TCTTGGCGTGCAGGCCCTGGCCAGCCATCCGAAAAAGACTGAAAAACGCGGTCTCGGCGACCTCAACGTGCCGGTGACCT
TCGCGGGTGTGACCTTCCATCCCGGTCAGTACATCTATGCGGACAACAATGGCGTGATCATCTCGCCAAGTCCGTTGAAA
ATGCCTGAATAA

Upstream 100 bases:

>100_bases
CAGCGACCATGACATGGGCTAAGGTAAACAGCGACCGCCGGAACTCGTTTCAAAAGAGTGCGACATCCTTGATCGTCTTC
CTTGTTACAGGAGTTTTTCG

Downstream 100 bases:

>100_bases
ATCGCGGTCATCACAGGGGTGAGGATGTTCGAGGAAGAAAACGCGCAATGGGGGCTGGTGCATGCCCTGGTGCTGGACGG
TAAAGGCGGTGCGCGTTCGA

Product: ribonuclease activity regulator protein RraA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 163; Mature: 163

Protein sequence:

>163_residues
MNHYLTPDLCDAYPELVQVLEPMFSNFGGRDSFGGEIVTIKCFEDNSLVKEQAELKGNGKVLVVDGGGSLRCALLGDMIA
EKAAKNGWEGLVIYGCIRDVDVIAQTDLGVQALASHPKKTEKRGLGDLNVPVTFAGVTFHPGQYIYADNNGVIISPSPLK
MPE

Sequences:

>Translated_163_residues
MNHYLTPDLCDAYPELVQVLEPMFSNFGGRDSFGGEIVTIKCFEDNSLVKEQAELKGNGKVLVVDGGGSLRCALLGDMIA
EKAAKNGWEGLVIYGCIRDVDVIAQTDLGVQALASHPKKTEKRGLGDLNVPVTFAGVTFHPGQYIYADNNGVIISPSPLK
MPE
>Mature_163_residues
MNHYLTPDLCDAYPELVQVLEPMFSNFGGRDSFGGEIVTIKCFEDNSLVKEQAELKGNGKVLVVDGGGSLRCALLGDMIA
EKAAKNGWEGLVIYGCIRDVDVIAQTDLGVQALASHPKKTEKRGLGDLNVPVTFAGVTFHPGQYIYADNNGVIISPSPLK
MPE

Specific function: Regulator Of Rnase E/Rne, Which Inhibits The Endonuclease Activity And Thereby Leads To Increase The Half-Life And Abundance Of Rnas. General Modulator Of RNA Abundance. Does Not Have Any Methyltransferase Activity. [C]

COG id: COG0684

COG function: function code H; Demethylmenaquinone methyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RraA family

Homologues:

Organism=Escherichia coli, GI1790364, Length=158, Percent_Identity=53.7974683544304, Blast_Score=179, Evalue=8e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRAAH_PSEPF (Q3KFE1)

Other databases:

- EMBL:   CP000094
- RefSeq:   YP_347504.1
- ProteinModelPortal:   Q3KFE1
- SMR:   Q3KFE1
- STRING:   Q3KFE1
- GeneID:   3716609
- GenomeReviews:   CP000094_GR
- KEGG:   pfo:Pfl01_1772
- eggNOG:   COG0684
- HOGENOM:   HBG668175
- OMA:   HPMKTDK
- ProtClustDB:   PRK09372
- BioCyc:   PFLU205922:PFL_1772-MONOMER
- InterPro:   IPR005493
- InterPro:   IPR010203
- Gene3D:   G3DSA:3.50.30.40
- TIGRFAMs:   TIGR01935

Pfam domain/function: PF03737 Methyltransf_6; SSF89562 RNaseE_inh/diMeMenaQ_MeTrfase

EC number: NA

Molecular weight: Translated: 17541; Mature: 17541

Theoretical pI: Translated: 4.64; Mature: 4.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNHYLTPDLCDAYPELVQVLEPMFSNFGGRDSFGGEIVTIKCFEDNSLVKEQAELKGNGK
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCHHHHHHHHCCCCE
VLVVDGGGSLRCALLGDMIAEKAAKNGWEGLVIYGCIRDVDVIAQTDLGVQALASHPKKT
EEEEECCCCEEHHHHHHHHHHHHHCCCCCEEEEEEEECCCEEEEECCCCHHHHHCCCCCH
EKRGLGDLNVPVTFAGVTFHPGQYIYADNNGVIISPSPLKMPE
HHCCCCCCCCCEEEEEEEECCCEEEEECCCCEEECCCCCCCCC
>Mature Secondary Structure
MNHYLTPDLCDAYPELVQVLEPMFSNFGGRDSFGGEIVTIKCFEDNSLVKEQAELKGNGK
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCHHHHHHHHCCCCE
VLVVDGGGSLRCALLGDMIAEKAAKNGWEGLVIYGCIRDVDVIAQTDLGVQALASHPKKT
EEEEECCCCEEHHHHHHHHHHHHHCCCCCEEEEEEEECCCEEEEECCCCHHHHHCCCCCH
EKRGLGDLNVPVTFAGVTFHPGQYIYADNNGVIISPSPLKMPE
HHCCCCCCCCCEEEEEEEECCCEEEEECCCCEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA