| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is yedI [H]
Identifier: 77457828
GI number: 77457828
Start: 1788258
End: 1789172
Strand: Direct
Name: yedI [H]
Synonym: Pfl01_1601
Alternate gene names: 77457828
Gene position: 1788258-1789172 (Clockwise)
Preceding gene: 77457826
Following gene: 77457831
Centisome position: 27.77
GC content: 61.53
Gene sequence:
>915_bases ATGGCAGGAAGCAGTTTGCTGGTGCTGATCGACGACATCGCCACCGTTCTGGACGACGTTGCGTTGATGACCAAAATGGC TGCCAAGAAGACCGCCGGCGTGCTCGGCGACGACTTGGCGCTCAATGCCCAGCAGGTCTCGGGCGTACGCGCGGAGCGGG AAATCCCCGTCGTTTGGGCGGTGGCCAAGGGCTCGTTCGTCAACAAACTGATTCTGGTGCCGTCGGCGCTGGCGATCAGT GCGTTCGTGCCGTGGCTGGTGACGCCACTGTTGATGGTCGGTGGCGCCTACCTGTGTTTCGAAGGTTTCGAAAAACTCGC GCACAAATTCCTGCACAGCAAGGCTGAAGACGAGGCCGAGCATGCGCAGTTGGTTGAAGCCGTGGCTGATCCGGCAACCG ATCTGGTGGCGTACGAGAAGGACAAGATCAAGGGCGCGATCCGCACCGACTTTATCCTCTCGGCGGAAATTATCGCCATC ACCCTCGGCACCGTGGCCGATGCTTCGCTGACCCAGCAAGTGATCGTGATGTCGGGCATCGCCATCGTCATGACCGTAGG CGTTTACGGTCTGGTGGCCGGCATCGTCAAACTCGATGACCTCGGTCTGTGGCTGACCCAGAAGCCCGGGCAGATGGCCA AAAGCATCGGCAACAGCATTCTGCGTGCGGCGCCGTACATGATGAAAAGCCTGTCGGTAATCGGCACTGCTGCGATGTTC CTGGTCGGTGGCGGCATCCTGACCCACGGCGTGCCGGTGGTGCATCACTGGATCGAAAGCGTCGGCGCAGCGGCCGGTGG CGCCGGGTTTGTGGTGCCGATGCTGTTGAACGGCGTGGCGGGGATCATCGCGGGTGCGGTGGTGCTGGCGGGCGTGTCCG TGATCGGCAAAGTCTGGAAAGCCCTGAAAGGCTAA
Upstream 100 bases:
>100_bases CGCATGGTAGCACCGGCCTCGCGCGGCGCTCAACAATGCCCCGTGTGGCCTGCAGTCGCGGTATGCTGCGCGGCATTATT CACATAAGGAAACAAGATTC
Downstream 100 bases:
>100_bases ATCCTGAAGCAAACAAAAAGGCCATTCGATTCGCATCGAATGGCCTTTTTTGTGGCTGGCATTTTTACTCGGCGATCTGC AACTTGCGCGACTCGGTGTA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 304; Mature: 303
Protein sequence:
>304_residues MAGSSLLVLIDDIATVLDDVALMTKMAAKKTAGVLGDDLALNAQQVSGVRAEREIPVVWAVAKGSFVNKLILVPSALAIS AFVPWLVTPLLMVGGAYLCFEGFEKLAHKFLHSKAEDEAEHAQLVEAVADPATDLVAYEKDKIKGAIRTDFILSAEIIAI TLGTVADASLTQQVIVMSGIAIVMTVGVYGLVAGIVKLDDLGLWLTQKPGQMAKSIGNSILRAAPYMMKSLSVIGTAAMF LVGGGILTHGVPVVHHWIESVGAAAGGAGFVVPMLLNGVAGIIAGAVVLAGVSVIGKVWKALKG
Sequences:
>Translated_304_residues MAGSSLLVLIDDIATVLDDVALMTKMAAKKTAGVLGDDLALNAQQVSGVRAEREIPVVWAVAKGSFVNKLILVPSALAIS AFVPWLVTPLLMVGGAYLCFEGFEKLAHKFLHSKAEDEAEHAQLVEAVADPATDLVAYEKDKIKGAIRTDFILSAEIIAI TLGTVADASLTQQVIVMSGIAIVMTVGVYGLVAGIVKLDDLGLWLTQKPGQMAKSIGNSILRAAPYMMKSLSVIGTAAMF LVGGGILTHGVPVVHHWIESVGAAAGGAGFVVPMLLNGVAGIIAGAVVLAGVSVIGKVWKALKG >Mature_303_residues AGSSLLVLIDDIATVLDDVALMTKMAAKKTAGVLGDDLALNAQQVSGVRAEREIPVVWAVAKGSFVNKLILVPSALAISA FVPWLVTPLLMVGGAYLCFEGFEKLAHKFLHSKAEDEAEHAQLVEAVADPATDLVAYEKDKIKGAIRTDFILSAEIIAIT LGTVADASLTQQVIVMSGIAIVMTVGVYGLVAGIVKLDDLGLWLTQKPGQMAKSIGNSILRAAPYMMKSLSVIGTAAMFL VGGGILTHGVPVVHHWIESVGAAAGGAGFVVPMLLNGVAGIIAGAVVLAGVSVIGKVWKALKG
Specific function: Unknown
COG id: COG2354
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1788268, Length=300, Percent_Identity=60.3333333333333, Blast_Score=351, Evalue=3e-98,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008526 [H]
Pfam domain/function: PF05661 DUF808 [H]
EC number: NA
Molecular weight: Translated: 31430; Mature: 31298
Theoretical pI: Translated: 6.52; Mature: 6.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAGSSLLVLIDDIATVLDDVALMTKMAAKKTAGVLGDDLALNAQQVSGVRAEREIPVVWA CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHCCCCCCCCCEEEE VAKGSFVNKLILVPSALAISAFVPWLVTPLLMVGGAYLCFEGFEKLAHKFLHSKAEDEAE ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHH HAQLVEAVADPATDLVAYEKDKIKGAIRTDFILSAEIIAITLGTVADASLTQQVIVMSGI HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHCCHHHHHHHHHHHHH AIVMTVGVYGLVAGIVKLDDLGLWLTQKPGQMAKSIGNSILRAAPYMMKSLSVIGTAAMF HHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LVGGGILTHGVPVVHHWIESVGAAAGGAGFVVPMLLNGVAGIIAGAVVLAGVSVIGKVWK HHCCHHHHHCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ALKG HHCC >Mature Secondary Structure AGSSLLVLIDDIATVLDDVALMTKMAAKKTAGVLGDDLALNAQQVSGVRAEREIPVVWA CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHCCCCCCCCCEEEE VAKGSFVNKLILVPSALAISAFVPWLVTPLLMVGGAYLCFEGFEKLAHKFLHSKAEDEAE ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHH HAQLVEAVADPATDLVAYEKDKIKGAIRTDFILSAEIIAITLGTVADASLTQQVIVMSGI HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHCCHHHHHHHHHHHHH AIVMTVGVYGLVAGIVKLDDLGLWLTQKPGQMAKSIGNSILRAAPYMMKSLSVIGTAAMF HHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LVGGGILTHGVPVVHHWIESVGAAAGGAGFVVPMLLNGVAGIIAGAVVLAGVSVIGKVWK HHCCHHHHHCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ALKG HHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9097040; 9278503; 2527357; 7567469 [H]