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The map label for this gene is fliN [H]

Identifier: 77457774

GI number: 77457774

Start: 1735595

End: 1736053

Strand: Direct

Name: fliN [H]

Synonym: Pfl01_1547

Alternate gene names: 77457774

Gene position: 1735595-1736053 (Clockwise)

Preceding gene: 77457773

Following gene: 77457775

Centisome position: 26.96

GC content: 61.66

Gene sequence:

>459_bases
ATGAACGACGATATGAACACCCAGGACGATCAGGCACTGGCCGATGAATGGGCTGCCGCCCTGGAAGAAACCGGTGAAGC
CGGGCAGGCCGACATCGACGCGCTGCTGGCCGCCGACGCAGGTACTTCGAGCTCCAACCGTCTGCCGATGGAAGAGTTCG
GCAGCGTGCCGAAGAACAACGACCCGGTGACCCTCGACGGCCCGAACCTGGACGTGATTCTCGACATCCCGGTGTCGATC
TCGATGGAAGTGGGCAGCACCGACATCAACATCCGCAACCTGCTGCAACTCAACCAGGGTTCGGTGATCGAGCTCGATCG
TCTGGCCGGCGAGCCGCTGGACGTGCTGGTCAACGGCACCCTGATCGCTCACGGTGAAGTGGTGGTGGTCAACGAAAAGT
TCGGCATCCGTCTGACCGACGTGATCAGCCCGAGCGAACGCATCAAGAAGCTGCGCTGA

Upstream 100 bases:

>100_bases
CAACCTTGCGTTGCAGGTGATCGAGCCGATCGAGCGCCGCTGAAGCGGCGCCCTCACTCCCTGATTCTTTTACCGGTTTT
TTGCCCGCCGAGGACAAATG

Downstream 100 bases:

>100_bases
GTGAAAAAGGTTCTGGGTGCCTTGTTCGGTCTGGCGCTGGCGTTGCCGTTCAGCGTGCTGGCGGCCGAGCCGGTGGCGAC
CACCGCGGCGGCTGCTGCGC

Product: flagellar motor switch protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 152; Mature: 152

Protein sequence:

>152_residues
MNDDMNTQDDQALADEWAAALEETGEAGQADIDALLAADAGTSSSNRLPMEEFGSVPKNNDPVTLDGPNLDVILDIPVSI
SMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNEKFGIRLTDVISPSERIKKLR

Sequences:

>Translated_152_residues
MNDDMNTQDDQALADEWAAALEETGEAGQADIDALLAADAGTSSSNRLPMEEFGSVPKNNDPVTLDGPNLDVILDIPVSI
SMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNEKFGIRLTDVISPSERIKKLR
>Mature_152_residues
MNDDMNTQDDQALADEWAAALEETGEAGQADIDALLAADAGTSSSNRLPMEEFGSVPKNNDPVTLDGPNLDVILDIPVSI
SMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNEKFGIRLTDVISPSERIKKLR

Specific function: FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the mot

COG id: COG1886

COG function: function code NU; Flagellar motor switch/type III secretory pathway protein

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side (Potential). Bacterial flagellum basal body (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliN/MopA/SpaO family [H]

Homologues:

Organism=Escherichia coli, GI1788256, Length=153, Percent_Identity=42.483660130719, Blast_Score=114, Evalue=3e-27,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012826
- InterPro:   IPR001172
- InterPro:   IPR001543 [H]

Pfam domain/function: PF01052 SpoA [H]

EC number: NA

Molecular weight: Translated: 16277; Mature: 16277

Theoretical pI: Translated: 3.82; Mature: 3.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDDMNTQDDQALADEWAAALEETGEAGQADIDALLAADAGTSSSNRLPMEEFGSVPKNN
CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHEEEEECCCCCCCCCCCHHHHCCCCCCC
DPVTLDGPNLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGT
CCEEECCCCEEEEEECCCEEEEECCCCCCCHHHHEECCCCCEEEEHHHCCCCEEEEEECE
LIAHGEVVVVNEKFGIRLTDVISPSERIKKLR
EEECCCEEEEECCCCEEEEECCCCHHHHHCCC
>Mature Secondary Structure
MNDDMNTQDDQALADEWAAALEETGEAGQADIDALLAADAGTSSSNRLPMEEFGSVPKNN
CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHEEEEECCCCCCCCCCCHHHHCCCCCCC
DPVTLDGPNLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGT
CCEEECCCCEEEEEECCCEEEEECCCCCCCHHHHEECCCCCEEEEHHHCCCCEEEEEECE
LIAHGEVVVVNEKFGIRLTDVISPSERIKKLR
EEECCCEEEEECCCCEEEEECCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7622217; 10984043 [H]