| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is yfiP [H]
Identifier: 77457686
GI number: 77457686
Start: 1630552
End: 1631145
Strand: Direct
Name: yfiP [H]
Synonym: Pfl01_1459
Alternate gene names: 77457686
Gene position: 1630552-1631145 (Clockwise)
Preceding gene: 77457685
Following gene: 77457690
Centisome position: 25.33
GC content: 64.81
Gene sequence:
>594_bases ATGTCCAGACCCCAATGCCTGCGCTGCCTGCGCCCACAAACCCATTGCCTGTGCCCGCTGATCCCCAGCCTCGACAGCCG CACCCGGGTGTTGCTGTTGCAGCACCCGAGCGAGGTCAATCACGCGCTCAACACCGCACGGCTGGCAGCGCTCGGGTTGA ACAATGCCGAGCTGATGGTCGGTGAGGTTTTCGAGGATTTGCCCGCGCTGCTGAACCGACCGGGGTATCGGGCGCGGTTG TTGTTTCCGGCGGACGATGCGCAACCGATGCAGGCGTACACCGCGTCCGATGAACCGCTGTTGCTGGTGGTGCCGGACGG CACGTGGCGCAAGGCGCGCAAGATGTTGCACCTCAATCCCTTGTTGGCGGCGTTGCCACGGGTGACGCTGGCCGAAGGCG GGATTTCCCGGTATCGGCTGCGCAAGGCGCCGGGGCCGGGGGCGCTGTCGACCATCGAGGCGATTGTTCAGGCGTTGCAG ACGCTGGAAGCGCCGGCGTCTTTCGAGCCGTTGCTCAAGCCGTTCGAGGCGTTGATCGAAGGGCAGATTGCGGCGATGGG GGAGGAGACTTTCCAGAAGAATCACGGTGGCTGA
Upstream 100 bases:
>100_bases GCGCCGTTTTCCATGATCATGCGCCGTGGCCGCAGCCGCGAGCCGCTGATCCAGACTTTCCGCGATCTGCTCAAAGCGCA GCTCAATCAGGCCTGAGAAC
Downstream 100 bases:
>100_bases TCGGACTCAGACCGATCGGACTCGCCCTGATCGTTCCCACGCAGAGCGTGGGAACGATCAATTCACCGCAAAGTCCGGAT CATCACTAGCGCTCGCGCAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 197; Mature: 196
Protein sequence:
>197_residues MSRPQCLRCLRPQTHCLCPLIPSLDSRTRVLLLQHPSEVNHALNTARLAALGLNNAELMVGEVFEDLPALLNRPGYRARL LFPADDAQPMQAYTASDEPLLLVVPDGTWRKARKMLHLNPLLAALPRVTLAEGGISRYRLRKAPGPGALSTIEAIVQALQ TLEAPASFEPLLKPFEALIEGQIAAMGEETFQKNHGG
Sequences:
>Translated_197_residues MSRPQCLRCLRPQTHCLCPLIPSLDSRTRVLLLQHPSEVNHALNTARLAALGLNNAELMVGEVFEDLPALLNRPGYRARL LFPADDAQPMQAYTASDEPLLLVVPDGTWRKARKMLHLNPLLAALPRVTLAEGGISRYRLRKAPGPGALSTIEAIVQALQ TLEAPASFEPLLKPFEALIEGQIAAMGEETFQKNHGG >Mature_196_residues SRPQCLRCLRPQTHCLCPLIPSLDSRTRVLLLQHPSEVNHALNTARLAALGLNNAELMVGEVFEDLPALLNRPGYRARLL FPADDAQPMQAYTASDEPLLLVVPDGTWRKARKMLHLNPLLAALPRVTLAEGGISRYRLRKAPGPGALSTIEAIVQALQT LEAPASFEPLLKPFEALIEGQIAAMGEETFQKNHGG
Specific function: Unknown
COG id: COG3148
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the DTW family [H]
Homologues:
Organism=Homo sapiens, GI27734779, Length=205, Percent_Identity=30.7317073170732, Blast_Score=92, Evalue=3e-19, Organism=Escherichia coli, GI87082133, Length=161, Percent_Identity=34.1614906832298, Blast_Score=80, Evalue=1e-16, Organism=Drosophila melanogaster, GI21358337, Length=192, Percent_Identity=34.375, Blast_Score=97, Evalue=8e-21,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005636 [H]
Pfam domain/function: PF03942 DTW [H]
EC number: NA
Molecular weight: Translated: 21553; Mature: 21422
Theoretical pI: Translated: 7.98; Mature: 7.98
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRPQCLRCLRPQTHCLCPLIPSLDSRTRVLLLQHPSEVNHALNTARLAALGLNNAELMV CCCHHHHHHHCCCCHHHCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCHHHHH GEVFEDLPALLNRPGYRARLLFPADDAQPMQAYTASDEPLLLVVPDGTWRKARKMLHLNP HHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHCCCCCCCEEEEECCCCHHHHHHHHHCCH LLAALPRVTLAEGGISRYRLRKAPGPGALSTIEAIVQALQTLEAPASFEPLLKPFEALIE HHHHCCCHHHHCCCHHHHEEECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC GQIAAMGEETFQKNHGG CHHHHHHHHHHHHCCCC >Mature Secondary Structure SRPQCLRCLRPQTHCLCPLIPSLDSRTRVLLLQHPSEVNHALNTARLAALGLNNAELMV CCHHHHHHHCCCCHHHCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCHHHHH GEVFEDLPALLNRPGYRARLLFPADDAQPMQAYTASDEPLLLVVPDGTWRKARKMLHLNP HHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHCCCCCCCEEEEECCCCHHHHHHHHHCCH LLAALPRVTLAEGGISRYRLRKAPGPGALSTIEAIVQALQTLEAPASFEPLLKPFEALIE HHHHCCCHHHHCCCHHHHEEECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC GQIAAMGEETFQKNHGG CHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]