| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
Click here to switch to the map view.
The map label for this gene is 77457469
Identifier: 77457469
GI number: 77457469
Start: 1413147
End: 1414043
Strand: Reverse
Name: 77457469
Synonym: Pfl01_1242
Alternate gene names: NA
Gene position: 1414043-1413147 (Counterclockwise)
Preceding gene: 77457470
Following gene: 77457468
Centisome position: 21.96
GC content: 61.09
Gene sequence:
>897_bases GTGTCGATCATGATCACATCCTGCGACCATGCCTTGCGCCGCACTCGGGCAGCCCTCACCGGGCTCCCGTCCCGTGCCGG GCTGGGGCTCAAGAGCGAGCACTTCAGCGAAGTGCTCGATTCACGTCCGGACATCGGTTTTTTCGAAGTCCACGCCGAAA ACTACATGGTGGCCGGCGGCCCGTTTCATCATTTTCTGGGTTTGATTCGCGACGCGTATCCGCTGTCGTTGCATGGCGTC GGGCTGTCCATCGGTGCCGAAGGCGCGCTGGATGTCCAGCACCTCAAACGCCTGTCAGCGCTGATCGAGCGCTATCAACC CCACTCTTTTTCCGAACACCTGGCCTGGTCGAGCCATGGCCCGGTGTTTCTCAATGATTTACTGCCCCTGGCGTACGACA CGCCGACGCTGAATCGCGTCTGCGATCACATCGACCAGGTGCAGAACACCCTCAAACGCCCGATGCTGCTGGAGAACCCG GCAACCTATCTGGCCTTCCAGCGCTCGACGATCGACGAAGCGGAATTCATCCGTGAGGTCATCCGGCGCACTGGCTGTGG TCTGTTGCTGGACGTGAACAACGTCTACGTCTCGTGCATCAACCATCAGCGCGCCCCCCTGGCTTATCTCGACGCACTGC CGCTGCACGCGGTGGGCGAGATTCATCTGGCGGGGTTTGCTGAAGACTCCGACAGCCTCGGTGATCGCTTGCTGATCGAT GATCACGGCGCACCGATCGATCAAGCCGTCTGGTCGTTGTATCGAAAAGCGCTGGAACGTGTCGGCCCGGTGGCGACGCT GATCGAACGGGACAATCAGGTGCCGGCCTTCAACATGCTGTTGGCGGAAGCGCAGCAGGCCGATGAGCTACTGCTGTGCG CGGGAGGTCGGCCATGA
Upstream 100 bases:
>100_bases CCGAAAGGCACCTGCACCACCACCGAAAGCAAAACCTCGCCGACCGGTTTCGGTCAGCTCGAAGCGTTCAAAGCCAAGTC CTGATCCGGGAGCCGCCCGA
Downstream 100 bases:
>100_bases GCACTCAAGCCGCATTCAGCGCAGCGTTGCTCGATATCGACCTGCCCTGCCCCGACGGCTTGTGCAGCGCCAACGGCGCC GATCCGGCCAGCCGTTTCGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 298; Mature: 297
Protein sequence:
>298_residues MSIMITSCDHALRRTRAALTGLPSRAGLGLKSEHFSEVLDSRPDIGFFEVHAENYMVAGGPFHHFLGLIRDAYPLSLHGV GLSIGAEGALDVQHLKRLSALIERYQPHSFSEHLAWSSHGPVFLNDLLPLAYDTPTLNRVCDHIDQVQNTLKRPMLLENP ATYLAFQRSTIDEAEFIREVIRRTGCGLLLDVNNVYVSCINHQRAPLAYLDALPLHAVGEIHLAGFAEDSDSLGDRLLID DHGAPIDQAVWSLYRKALERVGPVATLIERDNQVPAFNMLLAEAQQADELLLCAGGRP
Sequences:
>Translated_298_residues MSIMITSCDHALRRTRAALTGLPSRAGLGLKSEHFSEVLDSRPDIGFFEVHAENYMVAGGPFHHFLGLIRDAYPLSLHGV GLSIGAEGALDVQHLKRLSALIERYQPHSFSEHLAWSSHGPVFLNDLLPLAYDTPTLNRVCDHIDQVQNTLKRPMLLENP ATYLAFQRSTIDEAEFIREVIRRTGCGLLLDVNNVYVSCINHQRAPLAYLDALPLHAVGEIHLAGFAEDSDSLGDRLLID DHGAPIDQAVWSLYRKALERVGPVATLIERDNQVPAFNMLLAEAQQADELLLCAGGRP >Mature_297_residues SIMITSCDHALRRTRAALTGLPSRAGLGLKSEHFSEVLDSRPDIGFFEVHAENYMVAGGPFHHFLGLIRDAYPLSLHGVG LSIGAEGALDVQHLKRLSALIERYQPHSFSEHLAWSSHGPVFLNDLLPLAYDTPTLNRVCDHIDQVQNTLKRPMLLENPA TYLAFQRSTIDEAEFIREVIRRTGCGLLLDVNNVYVSCINHQRAPLAYLDALPLHAVGEIHLAGFAEDSDSLGDRLLIDD HGAPIDQAVWSLYRKALERVGPVATLIERDNQVPAFNMLLAEAQQADELLLCAGGRP
Specific function: Unknown
COG id: COG3220
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0276 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007801 - InterPro: IPR013022 [H]
Pfam domain/function: PF05114 DUF692 [H]
EC number: NA
Molecular weight: Translated: 32924; Mature: 32793
Theoretical pI: Translated: 5.81; Mature: 5.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIMITSCDHALRRTRAALTGLPSRAGLGLKSEHFSEVLDSRPDIGFFEVHAENYMVAGG CEEEEECHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEECCCEEEECC PFHHFLGLIRDAYPLSLHGVGLSIGAEGALDVQHLKRLSALIERYQPHSFSEHLAWSSHG HHHHHHHHHHCCCCCEEECCEEEECCCCCCCHHHHHHHHHHHHHCCCCCHHHHCCCCCCC PVFLNDLLPLAYDTPTLNRVCDHIDQVQNTLKRPMLLENPATYLAFQRSTIDEAEFIREV CCHHHCCCHHHCCCCHHHHHHHHHHHHHHHHHCCEEECCCCHHEEEECCCCCHHHHHHHH IRRTGCGLLLDVNNVYVSCINHQRAPLAYLDALPLHAVGEIHLAGFAEDSDSLGDRLLID HHHCCCEEEEECCHHEEEECCCCCCCHHHHHCCCHHHHCCEEEEEECCCCCCCCCEEEEE DHGAPIDQAVWSLYRKALERVGPVATLIERDNQVPAFNMLLAEAQQADELLLCAGGRP CCCCCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEECCCCC >Mature Secondary Structure SIMITSCDHALRRTRAALTGLPSRAGLGLKSEHFSEVLDSRPDIGFFEVHAENYMVAGG EEEEECHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEECCCEEEECC PFHHFLGLIRDAYPLSLHGVGLSIGAEGALDVQHLKRLSALIERYQPHSFSEHLAWSSHG HHHHHHHHHHCCCCCEEECCEEEECCCCCCCHHHHHHHHHHHHHCCCCCHHHHCCCCCCC PVFLNDLLPLAYDTPTLNRVCDHIDQVQNTLKRPMLLENPATYLAFQRSTIDEAEFIREV CCHHHCCCHHHCCCCHHHHHHHHHHHHHHHHHCCEEECCCCHHEEEECCCCCHHHHHHHH IRRTGCGLLLDVNNVYVSCINHQRAPLAYLDALPLHAVGEIHLAGFAEDSDSLGDRLLID HHHCCCEEEEECCHHEEEECCCCCCCHHHHHCCCHHHHCCEEEEEECCCCCCCCCEEEEE DHGAPIDQAVWSLYRKALERVGPVATLIERDNQVPAFNMLLAEAQQADELLLCAGGRP CCCCCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 14528314 [H]