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The map label for this gene is lig [H]

Identifier: 77457439

GI number: 77457439

Start: 1384390

End: 1385424

Strand: Reverse

Name: lig [H]

Synonym: Pfl01_1212

Alternate gene names: 77457439

Gene position: 1385424-1384390 (Counterclockwise)

Preceding gene: 77457440

Following gene: 77457438

Centisome position: 21.52

GC content: 65.41

Gene sequence:

>1035_bases
ATGGACCTTGTTATCGCCCGCCCCGAAGGTTTGTACTGCCCCGCCGGGGATTTCTATATTGACCCGTGGAGACCCGTCGA
GCGCTCGGTCATCACTCATGCCCACGGCGACCATGCCCGTGGCGGCAACCAGCATTATCTGGCTGCCAGCGCCGGTGAAG
GGATTCTGCGCGCGCGTCTGGGCCAGGACATCAACCTGCAAACCCTCGACTACGGCCAGCGCCTGACCCACCACGGCGTC
ACCTTGAGTTTTCATCCCGCCGGTCATGTACTCGGCTCGGCCCAGGTGCGGCTGGAATACGGCGGCGAAGTCTGGGTCGC
GTCCGGCGACTACAAGATCGAACCGGACGGCACTTGCGCGCCGTTCGAACCGGTGCGCTGCCACACCTTCATCACCGAAT
CGACCTTCGGCCTGCCGATCTACCGCTGGCAGCCGCAGGCGCAGGTGTTCGCCGAAATCAATCAGTGGTGGCAGGCCAAC
ATCGAGGCCGGCAAGGCCAGCGTGCTGTTCTGCTATTCGTTCGGCAAGGCCCAGCGGATTCTCCACGGCATCGACGAAAC
CCTCGGGCCGATCCTCAGCCACGGTGCGGTCGAGCCGCTGAACCGTGTGTACCGCGAGGCCGGTGTCTACCTGCCGCCAA
CGATCTACGCCGGCGAGGTGAAAAAGAACGACCCGATGATGCGCCAGGCGCTGGTCATCGCCCCGCCCTCGGCCGGCGGC
AGCAGTTGGATGCGCCGTTTCGGCGATTACAGCGACAGCTTCGCCAGCGGCTGGATGCGCCTGCGCGGCACCCGTCGGCG
GCGCGGCGTGGATCGCGGCTTCGTGCTCTCGGATCACGCCGACTGGCCCGGTCTTTTATGGGCTATCGAACAGACCGGCG
CCGAGCGGGTGATGGTCACCCACGGCTCGATTGGCGTGCTGGTGCGCCATCTGCGCGAGCAGGGTCTGGACGCACAGGGT
TTCAACACCGAATACGGTGACGATGAGGAAGAGCTGCCTGCCGCCACGCCCGCCGTTGCCGAGGTGCAACCATGA

Upstream 100 bases:

>100_bases
GCAGAGCGTGGGAACGATCATGCGACAGTTCAGAAAATCAATAGAACTTCTGACTTCGCGCCAACCTCATAGCTAACAAG
TCTTCCATTCCGGTAACGCC

Downstream 100 bases:

>100_bases
AAGACTTCGCCGGGTTGTACGCCGAACTCGACGCCACCACCTCCAGCAACGCCAAACTGGCGGCCATGCAAACCTACTTC
GCCCAGGCGCAACCGCAGGA

Product: hypothetical protein

Products: NA

Alternate protein names: Polydeoxyribonucleotide synthase [ATP] [H]

Number of amino acids: Translated: 344; Mature: 344

Protein sequence:

>344_residues
MDLVIARPEGLYCPAGDFYIDPWRPVERSVITHAHGDHARGGNQHYLAASAGEGILRARLGQDINLQTLDYGQRLTHHGV
TLSFHPAGHVLGSAQVRLEYGGEVWVASGDYKIEPDGTCAPFEPVRCHTFITESTFGLPIYRWQPQAQVFAEINQWWQAN
IEAGKASVLFCYSFGKAQRILHGIDETLGPILSHGAVEPLNRVYREAGVYLPPTIYAGEVKKNDPMMRQALVIAPPSAGG
SSWMRRFGDYSDSFASGWMRLRGTRRRRGVDRGFVLSDHADWPGLLWAIEQTGAERVMVTHGSIGVLVRHLREQGLDAQG
FNTEYGDDEEELPAATPAVAEVQP

Sequences:

>Translated_344_residues
MDLVIARPEGLYCPAGDFYIDPWRPVERSVITHAHGDHARGGNQHYLAASAGEGILRARLGQDINLQTLDYGQRLTHHGV
TLSFHPAGHVLGSAQVRLEYGGEVWVASGDYKIEPDGTCAPFEPVRCHTFITESTFGLPIYRWQPQAQVFAEINQWWQAN
IEAGKASVLFCYSFGKAQRILHGIDETLGPILSHGAVEPLNRVYREAGVYLPPTIYAGEVKKNDPMMRQALVIAPPSAGG
SSWMRRFGDYSDSFASGWMRLRGTRRRRGVDRGFVLSDHADWPGLLWAIEQTGAERVMVTHGSIGVLVRHLREQGLDAQG
FNTEYGDDEEELPAATPAVAEVQP
>Mature_344_residues
MDLVIARPEGLYCPAGDFYIDPWRPVERSVITHAHGDHARGGNQHYLAASAGEGILRARLGQDINLQTLDYGQRLTHHGV
TLSFHPAGHVLGSAQVRLEYGGEVWVASGDYKIEPDGTCAPFEPVRCHTFITESTFGLPIYRWQPQAQVFAEINQWWQAN
IEAGKASVLFCYSFGKAQRILHGIDETLGPILSHGAVEPLNRVYREAGVYLPPTIYAGEVKKNDPMMRQALVIAPPSAGG
SSWMRRFGDYSDSFASGWMRLRGTRRRRGVDRGFVLSDHADWPGLLWAIEQTGAERVMVTHGSIGVLVRHLREQGLDAQG
FNTEYGDDEEELPAATPAVAEVQP

Specific function: DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair [H]

COG id: COG1236

COG function: function code J; Predicted exonuclease of the beta-lactamase fold involved in RNA processing

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the ATP- dependent DNA ligase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000977
- InterPro:   IPR012309
- InterPro:   IPR012310
- InterPro:   IPR016059
- InterPro:   IPR012308
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR011108 [H]

Pfam domain/function: PF04679 DNA_ligase_A_C; PF01068 DNA_ligase_A_M; PF04675 DNA_ligase_A_N; PF07521 RMMBL [H]

EC number: =6.5.1.1 [H]

Molecular weight: Translated: 38072; Mature: 38072

Theoretical pI: Translated: 6.27; Mature: 6.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLVIARPEGLYCPAGDFYIDPWRPVERSVITHAHGDHARGGNQHYLAASAGEGILRARL
CCEEEECCCCCCCCCCCEEECCCCHHHHHHHHCCCCCCCCCCCCEEEEECCCCCHHHHHC
GQDINLQTLDYGQRLTHHGVTLSFHPAGHVLGSAQVRLEYGGEVWVASGDYKIEPDGTCA
CCCCCEEEECCCHHHHHCCEEEEECCCCCEECCEEEEEEECCEEEEECCCEEECCCCCCC
PFEPVRCHTFITESTFGLPIYRWQPQAQVFAEINQWWQANIEAGKASVLFCYSFGKAQRI
CCCCCEEEEEEECCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCEEEEEEEECCHHHHH
LHGIDETLGPILSHGAVEPLNRVYREAGVYLPPTIYAGEVKKNDPMMRQALVIAPPSAGG
HHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCEEECCCCCCCCHHHEEEEEECCCCCH
SSWMRRFGDYSDSFASGWMRLRGTRRRRGVDRGFVLSDHADWPGLLWAIEQTGAERVMVT
HHHHHHHCCCCHHHHHHHHHHCCCHHHCCCCCCEEEECCCCCCCEEEEEECCCCCEEEEE
HGSIGVLVRHLREQGLDAQGFNTEYGDDEEELPAATPAVAEVQP
CCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MDLVIARPEGLYCPAGDFYIDPWRPVERSVITHAHGDHARGGNQHYLAASAGEGILRARL
CCEEEECCCCCCCCCCCEEECCCCHHHHHHHHCCCCCCCCCCCCEEEEECCCCCHHHHHC
GQDINLQTLDYGQRLTHHGVTLSFHPAGHVLGSAQVRLEYGGEVWVASGDYKIEPDGTCA
CCCCCEEEECCCHHHHHCCEEEEECCCCCEECCEEEEEEECCEEEEECCCEEECCCCCCC
PFEPVRCHTFITESTFGLPIYRWQPQAQVFAEINQWWQANIEAGKASVLFCYSFGKAQRI
CCCCCEEEEEEECCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCEEEEEEEECCHHHHH
LHGIDETLGPILSHGAVEPLNRVYREAGVYLPPTIYAGEVKKNDPMMRQALVIAPPSAGG
HHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCEEECCCCCCCCHHHEEEEEECCCCCH
SSWMRRFGDYSDSFASGWMRLRGTRRRRGVDRGFVLSDHADWPGLLWAIEQTGAERVMVT
HHHHHHHCCCCHHHHHHHHHHCCCHHHCCCCCCEEEECCCCCCCEEEEEECCCCCEEEEE
HGSIGVLVRHLREQGLDAQGFNTEYGDDEEELPAATPAVAEVQP
CCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA