Click here to switch to the map view.

The map label for this gene is ubiC1

Identifier: 77456938

GI number: 77456938

Start: 841082

End: 841639

Strand: Direct

Name: ubiC1

Synonym: Pfl01_0710

Alternate gene names: 77456938

Gene position: 841082-841639 (Clockwise)

Preceding gene: 77456937

Following gene: 77456944

Centisome position: 13.06

GC content: 62.9

Gene sequence:

>558_bases
ATGGATACAAGTCATTACTGGTCATCGCGACCGCTGTCGGAATTGACCGGCTCCGAGCATCACTGGCTGTTTTTGCCCGG
GGCACTGACCCCACGTCTGAAAGCCATGGGCGATTATTCAATCGAAGTCGTCGAGCAGTCCCATGGCCCGCTCAATCCTG
AAGAAGCGCAAGCGCTGAACGTGTCGCCAAACACCATTGGTTGGGTGCGCGAAGTGGTGATGAAGCTCGACGGCGAGGCC
TGCGTCACCGCGCGCAGCCTGACCAGCGTGCCGGCGCTGAATGGCGACTGGGCGGATCTGAACGGCTACGGCCGTCGACC
GCTGGCCGAGATTCTCTACACCTCGGAGCAGACCCTGCGCGAACCATTCCAATGTGCCTTGCTGCCGCCCGGTGCGCCGT
TGGCCGCGCTGTCCTATCGCTACGCGCCGCAAGCCGAACGTCTGTTGGCCCGGCGTTCGCGTTTCACCCGCAATGGTTCG
GCGCTGCTGGTCAGCGAGTGCTTTCTGCCAGCGTTCTGGGCTCGGGTCGAGTACGCTCAGGCGCTCAAGTCGGCCTGA

Upstream 100 bases:

>100_bases
TGACCGAAGAAAACGGAGCCGAGTGACAGACACCGCCGGTGAAGGGTTGGCCTTCCACGGCAACCAACAATTCACCATCA
CCAGGAAGGTGTGAGCGGGT

Downstream 100 bases:

>100_bases
TGAAATGAAACCTGCGGAAGCGAACCCCCGCAGGTTTTTTTTCGCCGGTTTTTCAGAGCCGGATCACCGCTTCGATTTGC
TTGATGGCCGGCGTCAGCGC

Product: chorismate lyase

Products: NA

Alternate protein names: CL 1; CPL 1

Number of amino acids: Translated: 185; Mature: 185

Protein sequence:

>185_residues
MDTSHYWSSRPLSELTGSEHHWLFLPGALTPRLKAMGDYSIEVVEQSHGPLNPEEAQALNVSPNTIGWVREVVMKLDGEA
CVTARSLTSVPALNGDWADLNGYGRRPLAEILYTSEQTLREPFQCALLPPGAPLAALSYRYAPQAERLLARRSRFTRNGS
ALLVSECFLPAFWARVEYAQALKSA

Sequences:

>Translated_185_residues
MDTSHYWSSRPLSELTGSEHHWLFLPGALTPRLKAMGDYSIEVVEQSHGPLNPEEAQALNVSPNTIGWVREVVMKLDGEA
CVTARSLTSVPALNGDWADLNGYGRRPLAEILYTSEQTLREPFQCALLPPGAPLAALSYRYAPQAERLLARRSRFTRNGS
ALLVSECFLPAFWARVEYAQALKSA
>Mature_185_residues
MDTSHYWSSRPLSELTGSEHHWLFLPGALTPRLKAMGDYSIEVVEQSHGPLNPEEAQALNVSPNTIGWVREVVMKLDGEA
CVTARSLTSVPALNGDWADLNGYGRRPLAEILYTSEQTLREPFQCALLPPGAPLAALSYRYAPQAERLLARRSRFTRNGS
ALLVSECFLPAFWARVEYAQALKSA

Specific function: Removes the pyruvyl group from chorismate, with concomitant aromatization of the ring, to provide 4- hydroxybenzoate (4HB) for the ubiquinone pathway

COG id: COG3161

COG function: function code H; 4-hydroxybenzoate synthetase (chorismate lyase)

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ubiC family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): UBIC1_PSEPF (Q3KIF2)

Other databases:

- EMBL:   CP000094
- RefSeq:   YP_346443.1
- ProteinModelPortal:   Q3KIF2
- SMR:   Q3KIF2
- STRING:   Q3KIF2
- GeneID:   3714724
- GenomeReviews:   CP000094_GR
- KEGG:   pfo:Pfl01_0710
- eggNOG:   COG3161
- HOGENOM:   HBG644467
- OMA:   MNTSSGW
- ProtClustDB:   CLSK752967
- BioCyc:   PFLU205922:PFL_0710-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01632
- InterPro:   IPR007440

Pfam domain/function: PF04345 Chor_lyase

EC number: =4.1.3.40

Molecular weight: Translated: 20500; Mature: 20500

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: BINDING 70-70 BINDING 108-108

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTSHYWSSRPLSELTGSEHHWLFLPGALTPRLKAMGDYSIEVVEQSHGPLNPEEAQALN
CCCCCCCCCCCHHHHCCCCCEEEEECCCCCCHHHHCCCCEEEEEECCCCCCCCCCCEEEC
VSPNTIGWVREVVMKLDGEACVTARSLTSVPALNGDWADLNGYGRRPLAEILYTSEQTLR
CCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHH
EPFQCALLPPGAPLAALSYRYAPQAERLLARRSRFTRNGSALLVSECFLPAFWARVEYAQ
CCCEEEECCCCCCHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHH
ALKSA
HHHCC
>Mature Secondary Structure
MDTSHYWSSRPLSELTGSEHHWLFLPGALTPRLKAMGDYSIEVVEQSHGPLNPEEAQALN
CCCCCCCCCCCHHHHCCCCCEEEEECCCCCCHHHHCCCCEEEEEECCCCCCCCCCCEEEC
VSPNTIGWVREVVMKLDGEACVTARSLTSVPALNGDWADLNGYGRRPLAEILYTSEQTLR
CCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHH
EPFQCALLPPGAPLAALSYRYAPQAERLLARRSRFTRNGSALLVSECFLPAFWARVEYAQ
CCCEEEECCCCCCHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHH
ALKSA
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA