| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is 77456704
Identifier: 77456704
GI number: 77456704
Start: 550830
End: 552287
Strand: Direct
Name: 77456704
Synonym: Pfl01_0476
Alternate gene names: NA
Gene position: 550830-552287 (Clockwise)
Preceding gene: 77456703
Following gene: 77456705
Centisome position: 8.56
GC content: 63.51
Gene sequence:
>1458_bases ATGAGTCAGCCCATGAGCCGCAAACAGCAACTGCTCAAGCGTCACCGGCGCAATAAGCGCATCAGCCTGTTGATCGCACT GCTCGTGTTGATTGCCCTCGGCGTGCTGGTGGCCTGGTGGTTGCCGCTGGTGCTGGCGGTGGTCGGCTGGATTGCCCACG AAGCGTGGTTCGCCGATCACCTGTTCTATTCGCCGAAAGACGATTACCAATACAGCTTTCCGCCGTTCACACCGCAGCCA AAAGTGCATTTGAACGGCGAGCAATTGCGCCTCGACGAGGGCGTGATGCTGGTGGACGACGCCACACTGATCCTCGCCGT GAAGGTCAAAAGCAGCTTTCTGGGACGCTTCTTCGACCCTCGGGTCGAGTTGGCCGGCGGCACCCATCCCGACGCGCAGA CGTTCGAGCGTGGCGTCAACGGCCTGCGTTATCTGAACCTCAGCGGCCAGGCGCAGGCCTTGTCGCAAGGCCAGTTGCGT CTGCGCGGGCGCTTTTGCCGGGTGTCCGGCGAGCCAGTGCTGTGGGCGCTGGAACAACCGGACTACCGCCAGCAGCGAGT GATGGTCATCGCCCCTCACGCCGACGATGCCGAACTGGCCGCCTACGGTCTGTACAGCCAGGCCAAAGAAGCCTGGATCG TGACCCTGACCGCCGGCGAGATCGAAGCCGAACACTATCAACAGATGGGCCTGAACAAGGTCGAAGCGGCGCGTCTCAAG GGGCGTCTGCGTGCCTGGGACAGTCTTGCCGTACCGCGCTGGGCCGGCGTACCGCAGGAGCATTGCGTGCAGCTCGGGTA TTTCTGCCTGCAACTGGCGGCGATGCAGGCTGCGCCGAATCAACCCGTTGGCTCGCGGGAAGCCGATCTGAGCGACACAC GCCTGTTCCGTCAGCTGAATCCGTTTGCCTTGCCCGGCGATGCCGACGGCGCGCCGACCTGGAACAATCTGCTGGCCGAC CTGCGTGATGTGCTGTTGCGTGCGCGCCCGGATGTGATCGTGTTGCCGCACCCGACGCTGGATCCGCATCCCGACCATAT CTGCGCCCAAGAGGCGGTGCTGGAAGCCTTGCGCGGTCTCGATTACCAACCGACGCTGCTCGGTTACGCCAACCACTTGC ACGACAACGACCGTTGGCCGATGGGTGACAGCGGGCAGGGCATCGCCTTGCCGCCGACGTTCGATGCGACCCACGCGATG CAGCCGCTGTGCCTGCCGCTGTCGATCCAATTGCAACGCGACAAGGCCATGGCGCTGGGCATGATGCATGACCTGCAGCC ACCGGCGCCGTTCAAGCGTCGCCTGCGCCGGCTGTTTCAGCGACTGCTGGCTGGTCGGCGTCCATCGGTATACGGCGAGA ACGAATTTTTCCGCAAAGCGGTCAGACGCCAGGAGTTGTTCTGGGTACTGAAGCAGAGCGAAACAGGCGCGACGGGATCG CACCGGGGAGAGGTATGA
Upstream 100 bases:
>100_bases AGCACGCGCGGGCACTGGACAAGCCGCTGCGCTTTTCCTTCGGTCGCGCCGACCGTGAATACAAGGATCGCTGGTGCAAT CCTGTGCCGGTCTTCACCGT
Downstream 100 bases:
>100_bases GTCAACGCGCAAAGGTGCTGCAGCTGCAGCCCGATTACAACGTCAAATCCCATGATTTCGCCGACCTTGCCGAGCAAATC GTCAAGGCGCTGCCGACCGA
Product: LmbE-like protein
Products: NA
Alternate protein names: Lmbe Family Protein; LmbE-Like Protein; Deacetylase
Number of amino acids: Translated: 485; Mature: 484
Protein sequence:
>485_residues MSQPMSRKQQLLKRHRRNKRISLLIALLVLIALGVLVAWWLPLVLAVVGWIAHEAWFADHLFYSPKDDYQYSFPPFTPQP KVHLNGEQLRLDEGVMLVDDATLILAVKVKSSFLGRFFDPRVELAGGTHPDAQTFERGVNGLRYLNLSGQAQALSQGQLR LRGRFCRVSGEPVLWALEQPDYRQQRVMVIAPHADDAELAAYGLYSQAKEAWIVTLTAGEIEAEHYQQMGLNKVEAARLK GRLRAWDSLAVPRWAGVPQEHCVQLGYFCLQLAAMQAAPNQPVGSREADLSDTRLFRQLNPFALPGDADGAPTWNNLLAD LRDVLLRARPDVIVLPHPTLDPHPDHICAQEAVLEALRGLDYQPTLLGYANHLHDNDRWPMGDSGQGIALPPTFDATHAM QPLCLPLSIQLQRDKAMALGMMHDLQPPAPFKRRLRRLFQRLLAGRRPSVYGENEFFRKAVRRQELFWVLKQSETGATGS HRGEV
Sequences:
>Translated_485_residues MSQPMSRKQQLLKRHRRNKRISLLIALLVLIALGVLVAWWLPLVLAVVGWIAHEAWFADHLFYSPKDDYQYSFPPFTPQP KVHLNGEQLRLDEGVMLVDDATLILAVKVKSSFLGRFFDPRVELAGGTHPDAQTFERGVNGLRYLNLSGQAQALSQGQLR LRGRFCRVSGEPVLWALEQPDYRQQRVMVIAPHADDAELAAYGLYSQAKEAWIVTLTAGEIEAEHYQQMGLNKVEAARLK GRLRAWDSLAVPRWAGVPQEHCVQLGYFCLQLAAMQAAPNQPVGSREADLSDTRLFRQLNPFALPGDADGAPTWNNLLAD LRDVLLRARPDVIVLPHPTLDPHPDHICAQEAVLEALRGLDYQPTLLGYANHLHDNDRWPMGDSGQGIALPPTFDATHAM QPLCLPLSIQLQRDKAMALGMMHDLQPPAPFKRRLRRLFQRLLAGRRPSVYGENEFFRKAVRRQELFWVLKQSETGATGS HRGEV >Mature_484_residues SQPMSRKQQLLKRHRRNKRISLLIALLVLIALGVLVAWWLPLVLAVVGWIAHEAWFADHLFYSPKDDYQYSFPPFTPQPK VHLNGEQLRLDEGVMLVDDATLILAVKVKSSFLGRFFDPRVELAGGTHPDAQTFERGVNGLRYLNLSGQAQALSQGQLRL RGRFCRVSGEPVLWALEQPDYRQQRVMVIAPHADDAELAAYGLYSQAKEAWIVTLTAGEIEAEHYQQMGLNKVEAARLKG RLRAWDSLAVPRWAGVPQEHCVQLGYFCLQLAAMQAAPNQPVGSREADLSDTRLFRQLNPFALPGDADGAPTWNNLLADL RDVLLRARPDVIVLPHPTLDPHPDHICAQEAVLEALRGLDYQPTLLGYANHLHDNDRWPMGDSGQGIALPPTFDATHAMQ PLCLPLSIQLQRDKAMALGMMHDLQPPAPFKRRLRRLFQRLLAGRRPSVYGENEFFRKAVRRQELFWVLKQSETGATGSH RGEV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 54649; Mature: 54517
Theoretical pI: Translated: 8.68; Mature: 8.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQPMSRKQQLLKRHRRNKRISLLIALLVLIALGVLVAWWLPLVLAVVGWIAHEAWFADH CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LFYSPKDDYQYSFPPFTPQPKVHLNGEQLRLDEGVMLVDDATLILAVKVKSSFLGRFFDP HCCCCCCCCCCCCCCCCCCCCEEECCCEEEECCCEEEEECCEEEEEEEHHHHHHHHHCCC RVELAGGTHPDAQTFERGVNGLRYLNLSGQAQALSQGQLRLRGRFCRVSGEPVLWALEQP CEEECCCCCCCHHHHHHCCCCEEEEECCCCHHHHHCCCEEEEEEEEEECCCCEEEEECCC DYRQQRVMVIAPHADDAELAAYGLYSQAKEAWIVTLTAGEIEAEHYQQMGLNKVEAARLK CCCCCEEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHCCCHHHHHHHH GRLRAWDSLAVPRWAGVPQEHCVQLGYFCLQLAAMQAAPNQPVGSREADLSDTRLFRQLN HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCC PFALPGDADGAPTWNNLLADLRDVLLRARPDVIVLPHPTLDPHPDHICAQEAVLEALRGL CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCC DYQPTLLGYANHLHDNDRWPMGDSGQGIALPPTFDATHAMQPLCLPLSIQLQRDKAMALG CCCCHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCHHHCCCCEECCEEEEECCHHHHHHH MMHDLQPPAPFKRRLRRLFQRLLAGRRPSVYGENEFFRKAVRRQELFWVLKQSETGATGS HHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHEEECCCCCCCCC HRGEV CCCCC >Mature Secondary Structure SQPMSRKQQLLKRHRRNKRISLLIALLVLIALGVLVAWWLPLVLAVVGWIAHEAWFADH CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LFYSPKDDYQYSFPPFTPQPKVHLNGEQLRLDEGVMLVDDATLILAVKVKSSFLGRFFDP HCCCCCCCCCCCCCCCCCCCCEEECCCEEEECCCEEEEECCEEEEEEEHHHHHHHHHCCC RVELAGGTHPDAQTFERGVNGLRYLNLSGQAQALSQGQLRLRGRFCRVSGEPVLWALEQP CEEECCCCCCCHHHHHHCCCCEEEEECCCCHHHHHCCCEEEEEEEEEECCCCEEEEECCC DYRQQRVMVIAPHADDAELAAYGLYSQAKEAWIVTLTAGEIEAEHYQQMGLNKVEAARLK CCCCCEEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHCCCHHHHHHHH GRLRAWDSLAVPRWAGVPQEHCVQLGYFCLQLAAMQAAPNQPVGSREADLSDTRLFRQLN HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCC PFALPGDADGAPTWNNLLADLRDVLLRARPDVIVLPHPTLDPHPDHICAQEAVLEALRGL CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCC DYQPTLLGYANHLHDNDRWPMGDSGQGIALPPTFDATHAMQPLCLPLSIQLQRDKAMALG CCCCHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCHHHCCCCEECCEEEEECCHHHHHHH MMHDLQPPAPFKRRLRRLFQRLLAGRRPSVYGENEFFRKAVRRQELFWVLKQSETGATGS HHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHEEECCCCCCCCC HRGEV CCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA