| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
Click here to switch to the map view.
The map label for this gene is 77456462
Identifier: 77456462
GI number: 77456462
Start: 276248
End: 277666
Strand: Direct
Name: 77456462
Synonym: Pfl01_0234
Alternate gene names: NA
Gene position: 276248-277666 (Clockwise)
Preceding gene: 77456460
Following gene: 77456474
Centisome position: 4.29
GC content: 59.27
Gene sequence:
>1419_bases ATGGTCATCGGTCGCAAGCCCCACGTCACGCCATCACCTGCCCGTTTTGCACCGGATGCCACGCGGCCCCGTACAAGGCC AGGCGATACCCTTTCCATCGAGGCCCCGGCAATCAAGGTTGCGCGAACCTCTCCAGCGCTGGAAAAAGATCCGGCGATGC CGGTTCCTGCTGACGCCGCGGTCACGATTACCGGGATGCCCCTGGCGGAAAATACTTCTATCCGGTCCGTAGTGATGTCG CTTGAAAAGTATCGCCTCAGACTGCCGCGTGGCCTCCCGGCTGCCGATACCCAGGGCATCAGGCGTTTCAAGGGCCGCGA GTTTGTCGATATCGCTGCGGGTGAAATCGTGCAGGTCCGGCAGGACGTCGTAACGGGTGAATACCGTGCGACGCTCCCGT CGGAACAGTCCGCCTCAGGGCCGAGACTTGTTCTTGATCAGCGGACGATGATCTGGAAAGCCGAACAACTGTCGATTCTG GCTGACATCGGCAACGCCATGAGCGCCCGATCCGATTCCGAGCTTATCGGCCTCAAGCCTTCAATCGGCAGGGATGCAAC AGCTGCGCAGGGCCGACTGTATGAAGGCCGGGATGACCGGTTCGAGCGTCAAACCTCTCTCGCCGTGACGATCGTTGCCC GTGGACTGAGTCAGTTTGAACCCCGGCACGCAGCCACCCTGCGAACCGAGTTGCACGCGACGCACCAGATATTTTCCGAT GCTCGCAATGGGCTCGCGGCGAACTACGCCGAGGTCGCAGGTATTTTTCAGGGATTTTTCGGCACGCAGCATGCACTGAT CAAGGCGAAGTTCGCCGATTGCCTGTCGCGAGGCGAGGCGCTGTCAAAGGAGTATCAGGGGCCATGGGGGATGGAAAAGT TCGTGGGTGTGGCGTTTGACCAGGATCGCCGGGCGTGGATGTTCCAGTTCGATTTTCATGGCCGTTTATTTATCAGTCTC AATCACCTGCAAACCGGGGATTTTGCGGCCGTTCTGGGTCATGAGATGCTGCACACGAACAGGGTCAACCGATTCAAGAG CGTTGGGCCAGGCGCGCTGGATTTCTTTTATCTGGACGCGCGCATGGGAAATGCCCTAAGTCGTCCTGTGCCGGTTTACG ACATGGCCGAGCGCGGTGTTTCGGAAGTCATCATGCAGGGCGGCATGACGGTGGCATACCTGGATGGGTTCACGAGCGAC CACAGCCGTTTCACCGCCGGAGTCAGAGAGGCTCTGGGACTGGCAGAGAAGTTGGATGTCCAGACGGCTGTCGACCTGTT CAATGCCCACCCGACCGTTCGGACATCGCTAGCCTCAAGCAATGCCGACAGCATTATCTACGCCGCCACGAGTCTGCAGG CTCTGCATCTGGCCAGAATCGCAGACAGCCAGCTGCTTGAAAGCCTGTTGAACCGTTGA
Upstream 100 bases:
>100_bases CACTGAGCAATCCCGAAACGGATGAAATAACGCCTGTGCGACAGATGATTGTCGCGATGCCGCCCCGTCTCGGGCGACCT CTTCAGAAACAGGATTTCCT
Downstream 100 bases:
>100_bases CTATCTCAGCGCTTGTTCAGCCCCCGTGCCAGACGATCTCCACCCAGCTGAATCAGCGCCACCAGCGCCACCAGCAACAC GATCACGGTCAACATGATCT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 472; Mature: 472
Protein sequence:
>472_residues MVIGRKPHVTPSPARFAPDATRPRTRPGDTLSIEAPAIKVARTSPALEKDPAMPVPADAAVTITGMPLAENTSIRSVVMS LEKYRLRLPRGLPAADTQGIRRFKGREFVDIAAGEIVQVRQDVVTGEYRATLPSEQSASGPRLVLDQRTMIWKAEQLSIL ADIGNAMSARSDSELIGLKPSIGRDATAAQGRLYEGRDDRFERQTSLAVTIVARGLSQFEPRHAATLRTELHATHQIFSD ARNGLAANYAEVAGIFQGFFGTQHALIKAKFADCLSRGEALSKEYQGPWGMEKFVGVAFDQDRRAWMFQFDFHGRLFISL NHLQTGDFAAVLGHEMLHTNRVNRFKSVGPGALDFFYLDARMGNALSRPVPVYDMAERGVSEVIMQGGMTVAYLDGFTSD HSRFTAGVREALGLAEKLDVQTAVDLFNAHPTVRTSLASSNADSIIYAATSLQALHLARIADSQLLESLLNR
Sequences:
>Translated_472_residues MVIGRKPHVTPSPARFAPDATRPRTRPGDTLSIEAPAIKVARTSPALEKDPAMPVPADAAVTITGMPLAENTSIRSVVMS LEKYRLRLPRGLPAADTQGIRRFKGREFVDIAAGEIVQVRQDVVTGEYRATLPSEQSASGPRLVLDQRTMIWKAEQLSIL ADIGNAMSARSDSELIGLKPSIGRDATAAQGRLYEGRDDRFERQTSLAVTIVARGLSQFEPRHAATLRTELHATHQIFSD ARNGLAANYAEVAGIFQGFFGTQHALIKAKFADCLSRGEALSKEYQGPWGMEKFVGVAFDQDRRAWMFQFDFHGRLFISL NHLQTGDFAAVLGHEMLHTNRVNRFKSVGPGALDFFYLDARMGNALSRPVPVYDMAERGVSEVIMQGGMTVAYLDGFTSD HSRFTAGVREALGLAEKLDVQTAVDLFNAHPTVRTSLASSNADSIIYAATSLQALHLARIADSQLLESLLNR >Mature_472_residues MVIGRKPHVTPSPARFAPDATRPRTRPGDTLSIEAPAIKVARTSPALEKDPAMPVPADAAVTITGMPLAENTSIRSVVMS LEKYRLRLPRGLPAADTQGIRRFKGREFVDIAAGEIVQVRQDVVTGEYRATLPSEQSASGPRLVLDQRTMIWKAEQLSIL ADIGNAMSARSDSELIGLKPSIGRDATAAQGRLYEGRDDRFERQTSLAVTIVARGLSQFEPRHAATLRTELHATHQIFSD ARNGLAANYAEVAGIFQGFFGTQHALIKAKFADCLSRGEALSKEYQGPWGMEKFVGVAFDQDRRAWMFQFDFHGRLFISL NHLQTGDFAAVLGHEMLHTNRVNRFKSVGPGALDFFYLDARMGNALSRPVPVYDMAERGVSEVIMQGGMTVAYLDGFTSD HSRFTAGVREALGLAEKLDVQTAVDLFNAHPTVRTSLASSNADSIIYAATSLQALHLARIADSQLLESLLNR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 51649; Mature: 51649
Theoretical pI: Translated: 8.89; Mature: 8.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVIGRKPHVTPSPARFAPDATRPRTRPGDTLSIEAPAIKVARTSPALEKDPAMPVPADAA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEECCCCCCCCCCCCCCCCCE VTITGMPLAENTSIRSVVMSLEKYRLRLPRGLPAADTQGIRRFKGREFVDIAAGEIVQVR EEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCEEEHHCCHHHHHH QDVVTGEYRATLPSEQSASGPRLVLDQRTMIWKAEQLSILADIGNAMSARSDSELIGLKP HHHHCCCCEECCCCCCCCCCCEEEEECCHHEEEHHHHHHHHHHHHHHHCCCCCCEEECCC SIGRDATAAQGRLYEGRDDRFERQTSLAVTIVARGLSQFEPRHAATLRTELHATHQIFSD CCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH ARNGLAANYAEVAGIFQGFFGTQHALIKAKFADCLSRGEALSKEYQGPWGMEKFVGVAFD HHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHEEEEC QDRRAWMFQFDFHGRLFISLNHLQTGDFAAVLGHEMLHTNRVNRFKSVGPGALDFFYLDA CCCCEEEEEEECCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEC RMGNALSRPVPVYDMAERGVSEVIMQGGMTVAYLDGFTSDHSRFTAGVREALGLAEKLDV HHCCHHCCCCCHHHHHHCCHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH QTAVDLFNAHPTVRTSLASSNADSIIYAATSLQALHLARIADSQLLESLLNR HHHHHHHCCCCHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MVIGRKPHVTPSPARFAPDATRPRTRPGDTLSIEAPAIKVARTSPALEKDPAMPVPADAA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEECCCCCCCCCCCCCCCCCE VTITGMPLAENTSIRSVVMSLEKYRLRLPRGLPAADTQGIRRFKGREFVDIAAGEIVQVR EEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCEEEHHCCHHHHHH QDVVTGEYRATLPSEQSASGPRLVLDQRTMIWKAEQLSILADIGNAMSARSDSELIGLKP HHHHCCCCEECCCCCCCCCCCEEEEECCHHEEEHHHHHHHHHHHHHHHCCCCCCEEECCC SIGRDATAAQGRLYEGRDDRFERQTSLAVTIVARGLSQFEPRHAATLRTELHATHQIFSD CCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH ARNGLAANYAEVAGIFQGFFGTQHALIKAKFADCLSRGEALSKEYQGPWGMEKFVGVAFD HHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHEEEEC QDRRAWMFQFDFHGRLFISLNHLQTGDFAAVLGHEMLHTNRVNRFKSVGPGALDFFYLDA CCCCEEEEEEECCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEC RMGNALSRPVPVYDMAERGVSEVIMQGGMTVAYLDGFTSDHSRFTAGVREALGLAEKLDV HHCCHHCCCCCHHHHHHCCHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH QTAVDLFNAHPTVRTSLASSNADSIIYAATSLQALHLARIADSQLLESLLNR HHHHHHHCCCCHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA