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The map label for this gene is sdsB [H]

Identifier: 77456443

GI number: 77456443

Start: 256125

End: 257069

Strand: Reverse

Name: sdsB [H]

Synonym: Pfl01_0215

Alternate gene names: 77456443

Gene position: 257069-256125 (Counterclockwise)

Preceding gene: 77456445

Following gene: 77456442

Centisome position: 3.99

GC content: 61.59

Gene sequence:

>945_bases
ATGCATATCGACTTGCGCCAGCTCAGACACTTCATCGCCCTCGCCGAACAACGCAGTTTCGTCGCCGGCGCGCAGGCGGT
GAACCTGTCGCAGTCGGCGTTCAGCCGCAGCATTCAGGCGCTGGAGCACAGCGTCGGTTGTCAGTTGGTGGATCGCGGGC
GCAAGGAATTGCCGCCGACCAAACAGGGCCAGGTGCTGCTTGAACATGCGCGGCGCCTGGTCAGCGGTGCGCAGCAGATG
GCCAACGAGATCAGCCAGTTCAACGGGCTGGAGGCTGGGGAATTGCGCTTCGGTTGTGGCCCGGCGCCGGCAGCGGGATT
AATCCCGCGAGCGATCGGCAGCTTCATCGGCCGCTACCCGAAAGCGCGGGTGCATTACCAGGTCGATGACTGGCAGAGCC
TGAGCAAACGGCTGCTGAGCGAAGAGTTCGAATTCTTCGTTGCCGACACCCGACATTTCGAGGCCGACCCGGATTATCTG
ACCCACCGCTTGCGGCCACGCAAATGGCATTTCTGCTGTCGCGCCGGGCATCCGCTGGGCGCTTTCGAGCGAGTCACGGC
AGAGCAATTGATGAGTTATCCACTGGCCGTCAGCATTCGTCCGCCAAACCTGCGCAAGGTCATCGTTGACCTCAGTGGCC
GGCCGGATTTCGTCCCGAATGTGGAATGTGAAAACAGCGCCAGCCTGCTCGGCGTGGTGCTGCGCTCCGATGCGATCGGC
ATCGTCGGTGCCTATTCAGATGCACTGCATCAAGCCCGGGGTGAACTGGTTTGCTTGAAGGTCGAAGGGTTAGCGGATGA
TCTGGAGGAGCTTTACACCCGTTACGGAATTGTCAGCCGCGCCGGGTATCGGCTGTCGCCGTTGGCCGAGGCGATGATCG
AGCAGATCAAGGCGATCGATGCGGTGGAAGAAGAGGTGTGCTCACTGGCGAACCTCGCCGTCTGA

Upstream 100 bases:

>100_bases
TTTATGTTTTTACAAAGATTTACTGCATAAGAGATTGCCTTTATAAGGAGTCGACCTAATGCATATCCAATGCATTTCCC
GGATATTTTTTATGTGAAAA

Downstream 100 bases:

>100_bases
GCCCATGCGTTTCATGCATGGCAAGCATTCCCCGAATGCACTTGCCGAACACCCTCGCCGAAAGCGAAAAACCTCGCCTG
TCTTTCTGACTGGTGAACCC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 314

Protein sequence:

>314_residues
MHIDLRQLRHFIALAEQRSFVAGAQAVNLSQSAFSRSIQALEHSVGCQLVDRGRKELPPTKQGQVLLEHARRLVSGAQQM
ANEISQFNGLEAGELRFGCGPAPAAGLIPRAIGSFIGRYPKARVHYQVDDWQSLSKRLLSEEFEFFVADTRHFEADPDYL
THRLRPRKWHFCCRAGHPLGAFERVTAEQLMSYPLAVSIRPPNLRKVIVDLSGRPDFVPNVECENSASLLGVVLRSDAIG
IVGAYSDALHQARGELVCLKVEGLADDLEELYTRYGIVSRAGYRLSPLAEAMIEQIKAIDAVEEEVCSLANLAV

Sequences:

>Translated_314_residues
MHIDLRQLRHFIALAEQRSFVAGAQAVNLSQSAFSRSIQALEHSVGCQLVDRGRKELPPTKQGQVLLEHARRLVSGAQQM
ANEISQFNGLEAGELRFGCGPAPAAGLIPRAIGSFIGRYPKARVHYQVDDWQSLSKRLLSEEFEFFVADTRHFEADPDYL
THRLRPRKWHFCCRAGHPLGAFERVTAEQLMSYPLAVSIRPPNLRKVIVDLSGRPDFVPNVECENSASLLGVVLRSDAIG
IVGAYSDALHQARGELVCLKVEGLADDLEELYTRYGIVSRAGYRLSPLAEAMIEQIKAIDAVEEEVCSLANLAV
>Mature_314_residues
MHIDLRQLRHFIALAEQRSFVAGAQAVNLSQSAFSRSIQALEHSVGCQLVDRGRKELPPTKQGQVLLEHARRLVSGAQQM
ANEISQFNGLEAGELRFGCGPAPAAGLIPRAIGSFIGRYPKARVHYQVDDWQSLSKRLLSEEFEFFVADTRHFEADPDYL
THRLRPRKWHFCCRAGHPLGAFERVTAEQLMSYPLAVSIRPPNLRKVIVDLSGRPDFVPNVECENSASLLGVVLRSDAIG
IVGAYSDALHQARGELVCLKVEGLADDLEELYTRYGIVSRAGYRLSPLAEAMIEQIKAIDAVEEEVCSLANLAV

Specific function: Activates the transcription of the sdsA gene for sodium dodecyl sulfate (SDS) degradation [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787601, Length=301, Percent_Identity=25.2491694352159, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI145693105, Length=217, Percent_Identity=25.3456221198157, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI87081904, Length=200, Percent_Identity=27.5, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787879, Length=134, Percent_Identity=33.5820895522388, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1786713, Length=252, Percent_Identity=28.1746031746032, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI157672245, Length=189, Percent_Identity=28.042328042328, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI2367136, Length=124, Percent_Identity=31.4516129032258, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1789440, Length=175, Percent_Identity=24, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1789204, Length=188, Percent_Identity=25, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788748, Length=149, Percent_Identity=28.8590604026846, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1788626, Length=184, Percent_Identity=29.8913043478261, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34800; Mature: 34800

Theoretical pI: Translated: 6.85; Mature: 6.85

Prosite motif: PS50931 HTH_LYSR ; PS00290 IG_MHC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHIDLRQLRHFIALAEQRSFVAGAQAVNLSQSAFSRSIQALEHSVGCQLVDRGRKELPPT
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCHHHHHCCHHHCCCC
KQGQVLLEHARRLVSGAQQMANEISQFNGLEAGELRFGCGPAPAAGLIPRAIGSFIGRYP
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCC
KARVHYQVDDWQSLSKRLLSEEFEFFVADTRHFEADPDYLTHRLRPRKWHFCCRAGHPLG
CCEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCHHHHHCCCCCCCC
AFERVTAEQLMSYPLAVSIRPPNLRKVIVDLSGRPDFVPNVECENSASLLGVVLRSDAIG
HHHHHHHHHHHCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCE
IVGAYSDALHQARGELVCLKVEGLADDLEELYTRYGIVSRAGYRLSPLAEAMIEQIKAID
EEHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
AVEEEVCSLANLAV
HHHHHHHHHHHCCC
>Mature Secondary Structure
MHIDLRQLRHFIALAEQRSFVAGAQAVNLSQSAFSRSIQALEHSVGCQLVDRGRKELPPT
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCHHHHHCCHHHCCCC
KQGQVLLEHARRLVSGAQQMANEISQFNGLEAGELRFGCGPAPAAGLIPRAIGSFIGRYP
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCC
KARVHYQVDDWQSLSKRLLSEEFEFFVADTRHFEADPDYLTHRLRPRKWHFCCRAGHPLG
CCEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCHHHHHCCCCCCCC
AFERVTAEQLMSYPLAVSIRPPNLRKVIVDLSGRPDFVPNVECENSASLLGVVLRSDAIG
HHHHHHHHHHHCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCE
IVGAYSDALHQARGELVCLKVEGLADDLEELYTRYGIVSRAGYRLSPLAEAMIEQIKAID
EEHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
AVEEEVCSLANLAV
HHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1587481 [H]