| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is 77456377
Identifier: 77456377
GI number: 77456377
Start: 179814
End: 181997
Strand: Reverse
Name: 77456377
Synonym: Pfl01_0149
Alternate gene names: NA
Gene position: 181997-179814 (Counterclockwise)
Preceding gene: 77456378
Following gene: 77456361
Centisome position: 2.83
GC content: 58.79
Gene sequence:
>2184_bases ATGACTTCATTTGAAAAGGATCTGCAATCTCCGTTGGGCAGTCGCATGCTGACATGTCCTGCAGGTGGAAAATGGACAAG TTTCCAACTCATCGACGAGTTCTGTTCGGGTGAACCCTACGCCGGGTTGGCTTACATCGTTACCGACTCGGAAGGCCATA AGTACACAGGCCGCTTGGACGAAGCAGGCAAGGGCAAAGTGAATAATCACTTTGCGGGACCAGTAACGCTGCTGTTTGAT CAAGCATACGAAGGCAAGGAAAAGCTTTACTCATATTTGCAAGGCAGACCACATTACCCTCTGAAAATCACCGAGCTTCA GGTTCGCGCCGAAGCAACCCATTACCTGAACCCTAATGCCACTCGTACGCGGGAACGCCCCGAAATCGCAGACGGTGGGG ATTACTTTCAAGTCGAAGTCCGTCACCTGGTCAGACATGCCTCCCACCTTCCACCGGAGGTTTATCGCGATTATCCCCTC GATTCCGGGTGCGCAGCCATCATGCGCGAACACGGCAAACTCGGGGTCGCCCTGATGCCGCAACGTCACACCATTCTGGA AGTGCGACCGTTACGTGCGTTGCGTCCGATATTATCCACAGCTCCGGCATTCTGTGCACTCAACCTGTACCAGCTCGCAT TGATGGCAACCCTGAGTTACTGCCCTTTCGGCCAGAAACCCAAAGTCCCTTGCGCCGAAACCAGATCCGTTAAGTTTCTG CTGCAACCCAGCGTCGGCAATTGGTTCGGCGATGCACTGCCCAAGGGGGAAGAACTGTGGAAAGTCGACAGCGCCCAGAC CAAAGCCTATTACCCGCTCTACGAAGATGTTCCGTATTCCGCAAGGTTGGAAATCATCCCGTTTGACCCGAACCTCTATG CAGTCAACAGACATACGCCAGAACGTGATCCTGAACACCCGGCCAGCGTTCACTTTCTCGACGACATCGGTAGTAAAGAC AGTACAGACACCCAAGCTTTCATCACCCACAACGACGAGCTGATCCTGATCGCCGTTCGCGGTACCGCCGAGATCGTCGC CGATGGGTTACGCGATGCCGATGCCTTGCAGGTGCCGTTTGCGGAAGGCGAAGGCCAGGTACATCGAGGTTTCTATGAAG CGGCCAAAAAAGCTGCCGCATTCGCCGTCAATTACCTGGAAAAGTTCTACACCGGCCAAACACTCCTGATCTGCGGCCAC AGCCTCGGTGGCGCAATCACGCTGCTGCTGGCCGAAATGCTCCGCCGTAGGCCAGAGGGCTACAAAATCCAGCTCTACAC CTACGGCGCCCCCCGCGCCGGCGACGCGGATTTCGTCAAGGGCGCAGCCGATCTCGTGCATCACCGCATGGTCAACCACA ACGACCCGGTGCCCAGCGTGCCCGGCAGCTGGATGAACACCAAGGCCGATATCTACGGCACCGGGGCAGCGCTGACCTTC GTGAATGTGCCGCTCGGTCTATCGGTGTTCGTCGCGGGCATCACCAACTGGACCGGGGAAGCCTACGACCACCACGGCCG TTTGCGCCACGCCATGCCGGTGGAGTTCGGCCGCCAGCAGGTGTCGTCAATCCTCTGGGAGCCGGGCTGCGACACCATCA CCCAGCACGCAGCCTGTGACGTGGCGATCCGGCAGCGGCACGGCCTGCCGGATCGGCCGACGTTGCTCAAGCAGATCTTC GACGCCGGGCACCATTCGATGACCGGGGCTTACATCCCGGCGTGCTGGGCGGTGTTGCGGCGTTGGCAGGAGGCACAGGA GTCAAACCGCACGCTGGTTACCGAGCGAGAATTCGCATTGGTTGAGTCGGCCCTGCAGCGCATCACCGATCAGTTGCGCC GCCAGCGCAGCAATTTGCCGGGACGGCCGGACAGCTATGTGCGCAGCCGGAAAAACATCGTCGAAGCGCTCAATCATGAA ATCGAGAACATCCGCACGACCCGCGAACGGCTGGCCAGTCTGCGGCACCGGCGCCTGACGACCACGGATGTTTATGGATC GCTGGCAGAACAACCGGAACGTCTGGCCGAAAGCCTGCCGCGCTGGCGGCTGCATCCGGAAAACCTCGCAACGGAACAAC TGGCCATGGCACCGGAAGCCGCTGAGGATGACCCGCTGCTGGTAACGCTCTACGGTCACAGAATCGGCGCGCCCCACACT TTCGACATTGACTCGATCATCTGA
Upstream 100 bases:
>100_bases CTTCTGTTACGGCAACTACACCGACTTCAGCACTTTCACCATGCCGGATGGCCAAGTCTGCACCATTTATCCAGGTTGCA CGGAATAAGGAGATTTCGCC
Downstream 100 bases:
>100_bases CTCAAGCCTGTGGATACCACACCAGCCGCTCCGCCGCCGGGTTGCGCTCCTCCACCGCAAAACCCAGCGCCAGGTAGTGC TGGCGCGCATGGGGGTTATT
Product: lipase, class 3
Products: NA
Alternate protein names: Lipase Family Protein; Pdl Protein; Lipase Protein
Number of amino acids: Translated: 727; Mature: 726
Protein sequence:
>727_residues MTSFEKDLQSPLGSRMLTCPAGGKWTSFQLIDEFCSGEPYAGLAYIVTDSEGHKYTGRLDEAGKGKVNNHFAGPVTLLFD QAYEGKEKLYSYLQGRPHYPLKITELQVRAEATHYLNPNATRTRERPEIADGGDYFQVEVRHLVRHASHLPPEVYRDYPL DSGCAAIMREHGKLGVALMPQRHTILEVRPLRALRPILSTAPAFCALNLYQLALMATLSYCPFGQKPKVPCAETRSVKFL LQPSVGNWFGDALPKGEELWKVDSAQTKAYYPLYEDVPYSARLEIIPFDPNLYAVNRHTPERDPEHPASVHFLDDIGSKD STDTQAFITHNDELILIAVRGTAEIVADGLRDADALQVPFAEGEGQVHRGFYEAAKKAAAFAVNYLEKFYTGQTLLICGH SLGGAITLLLAEMLRRRPEGYKIQLYTYGAPRAGDADFVKGAADLVHHRMVNHNDPVPSVPGSWMNTKADIYGTGAALTF VNVPLGLSVFVAGITNWTGEAYDHHGRLRHAMPVEFGRQQVSSILWEPGCDTITQHAACDVAIRQRHGLPDRPTLLKQIF DAGHHSMTGAYIPACWAVLRRWQEAQESNRTLVTEREFALVESALQRITDQLRRQRSNLPGRPDSYVRSRKNIVEALNHE IENIRTTRERLASLRHRRLTTTDVYGSLAEQPERLAESLPRWRLHPENLATEQLAMAPEAAEDDPLLVTLYGHRIGAPHT FDIDSII
Sequences:
>Translated_727_residues MTSFEKDLQSPLGSRMLTCPAGGKWTSFQLIDEFCSGEPYAGLAYIVTDSEGHKYTGRLDEAGKGKVNNHFAGPVTLLFD QAYEGKEKLYSYLQGRPHYPLKITELQVRAEATHYLNPNATRTRERPEIADGGDYFQVEVRHLVRHASHLPPEVYRDYPL DSGCAAIMREHGKLGVALMPQRHTILEVRPLRALRPILSTAPAFCALNLYQLALMATLSYCPFGQKPKVPCAETRSVKFL LQPSVGNWFGDALPKGEELWKVDSAQTKAYYPLYEDVPYSARLEIIPFDPNLYAVNRHTPERDPEHPASVHFLDDIGSKD STDTQAFITHNDELILIAVRGTAEIVADGLRDADALQVPFAEGEGQVHRGFYEAAKKAAAFAVNYLEKFYTGQTLLICGH SLGGAITLLLAEMLRRRPEGYKIQLYTYGAPRAGDADFVKGAADLVHHRMVNHNDPVPSVPGSWMNTKADIYGTGAALTF VNVPLGLSVFVAGITNWTGEAYDHHGRLRHAMPVEFGRQQVSSILWEPGCDTITQHAACDVAIRQRHGLPDRPTLLKQIF DAGHHSMTGAYIPACWAVLRRWQEAQESNRTLVTEREFALVESALQRITDQLRRQRSNLPGRPDSYVRSRKNIVEALNHE IENIRTTRERLASLRHRRLTTTDVYGSLAEQPERLAESLPRWRLHPENLATEQLAMAPEAAEDDPLLVTLYGHRIGAPHT FDIDSII >Mature_726_residues TSFEKDLQSPLGSRMLTCPAGGKWTSFQLIDEFCSGEPYAGLAYIVTDSEGHKYTGRLDEAGKGKVNNHFAGPVTLLFDQ AYEGKEKLYSYLQGRPHYPLKITELQVRAEATHYLNPNATRTRERPEIADGGDYFQVEVRHLVRHASHLPPEVYRDYPLD SGCAAIMREHGKLGVALMPQRHTILEVRPLRALRPILSTAPAFCALNLYQLALMATLSYCPFGQKPKVPCAETRSVKFLL QPSVGNWFGDALPKGEELWKVDSAQTKAYYPLYEDVPYSARLEIIPFDPNLYAVNRHTPERDPEHPASVHFLDDIGSKDS TDTQAFITHNDELILIAVRGTAEIVADGLRDADALQVPFAEGEGQVHRGFYEAAKKAAAFAVNYLEKFYTGQTLLICGHS LGGAITLLLAEMLRRRPEGYKIQLYTYGAPRAGDADFVKGAADLVHHRMVNHNDPVPSVPGSWMNTKADIYGTGAALTFV NVPLGLSVFVAGITNWTGEAYDHHGRLRHAMPVEFGRQQVSSILWEPGCDTITQHAACDVAIRQRHGLPDRPTLLKQIFD AGHHSMTGAYIPACWAVLRRWQEAQESNRTLVTEREFALVESALQRITDQLRRQRSNLPGRPDSYVRSRKNIVEALNHEI ENIRTTRERLASLRHRRLTTTDVYGSLAEQPERLAESLPRWRLHPENLATEQLAMAPEAAEDDPLLVTLYGHRIGAPHTF DIDSII
Specific function: Unknown
COG id: COG3675
COG function: function code I; Predicted lipase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 81378; Mature: 81247
Theoretical pI: Translated: 6.80; Mature: 6.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSFEKDLQSPLGSRMLTCPAGGKWTSFQLIDEFCSGEPYAGLAYIVTDSEGHKYTGRLD CCCHHHHHHCHHCCCEEECCCCCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCEEECCCC EAGKGKVNNHFAGPVTLLFDQAYEGKEKLYSYLQGRPHYPLKITELQVRAEATHYLNPNA CCCCCCCCCCCCCCCEEEEHHHCCCHHHHHHHHCCCCCCCEEEEEEEEEECHHHCCCCCC TRTRERPEIADGGDYFQVEVRHLVRHASHLPPEVYRDYPLDSGCAAIMREHGKLGVALMP CCCCCCCCCCCCCCEEEHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHCCCCCEEECC QRHTILEVRPLRALRPILSTAPAFCALNLYQLALMATLSYCPFGQKPKVPCAETRSVKFL CCCCEEEECHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEE LQPSVGNWFGDALPKGEELWKVDSAQTKAYYPLYEDVPYSARLEIIPFDPNLYAVNRHTP ECCCCCCHHHHCCCCCCHHEECCCCCCCEECCHHHCCCCCCEEEEEECCCCEEEEECCCC ERDPEHPASVHFLDDIGSKDSTDTQAFITHNDELILIAVRGTAEIVADGLRDADALQVPF CCCCCCCCCEEEHHHCCCCCCCCCEEEEEECCCEEEEEECCCHHHHHHCCCCCCCEECCC AEGEGQVHRGFYEAAKKAAAFAVNYLEKFYTGQTLLICGHSLGGAITLLLAEMLRRRPEG CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHCCCC YKIQLYTYGAPRAGDADFVKGAADLVHHRMVNHNDPVPSVPGSWMNTKADIYGTGAALTF CEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCEEEEE VNVPLGLSVFVAGITNWTGEAYDHHGRLRHAMPVEFGRQQVSSILWEPGCDTITQHAACD EECCCCHHHHHHHHCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHH VAIRQRHGLPDRPTLLKQIFDAGHHSMTGAYIPACWAVLRRWQEAQESNRTLVTEREFAL HHHHHHCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHH VESALQRITDQLRRQRSNLPGRPDSYVRSRKNIVEALNHEIENIRTTRERLASLRHRRLT HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC TTDVYGSLAEQPERLAESLPRWRLHPENLATEQLAMAPEAAEDDPLLVTLYGHRIGAPHT HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCC FDIDSII CCHHHCC >Mature Secondary Structure TSFEKDLQSPLGSRMLTCPAGGKWTSFQLIDEFCSGEPYAGLAYIVTDSEGHKYTGRLD CCHHHHHHCHHCCCEEECCCCCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCEEECCCC EAGKGKVNNHFAGPVTLLFDQAYEGKEKLYSYLQGRPHYPLKITELQVRAEATHYLNPNA CCCCCCCCCCCCCCCEEEEHHHCCCHHHHHHHHCCCCCCCEEEEEEEEEECHHHCCCCCC TRTRERPEIADGGDYFQVEVRHLVRHASHLPPEVYRDYPLDSGCAAIMREHGKLGVALMP CCCCCCCCCCCCCCEEEHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHCCCCCEEECC QRHTILEVRPLRALRPILSTAPAFCALNLYQLALMATLSYCPFGQKPKVPCAETRSVKFL CCCCEEEECHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEE LQPSVGNWFGDALPKGEELWKVDSAQTKAYYPLYEDVPYSARLEIIPFDPNLYAVNRHTP ECCCCCCHHHHCCCCCCHHEECCCCCCCEECCHHHCCCCCCEEEEEECCCCEEEEECCCC ERDPEHPASVHFLDDIGSKDSTDTQAFITHNDELILIAVRGTAEIVADGLRDADALQVPF CCCCCCCCCEEEHHHCCCCCCCCCEEEEEECCCEEEEEECCCHHHHHHCCCCCCCEECCC AEGEGQVHRGFYEAAKKAAAFAVNYLEKFYTGQTLLICGHSLGGAITLLLAEMLRRRPEG CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHCCCC YKIQLYTYGAPRAGDADFVKGAADLVHHRMVNHNDPVPSVPGSWMNTKADIYGTGAALTF CEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCEEEEE VNVPLGLSVFVAGITNWTGEAYDHHGRLRHAMPVEFGRQQVSSILWEPGCDTITQHAACD EECCCCHHHHHHHHCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHH VAIRQRHGLPDRPTLLKQIFDAGHHSMTGAYIPACWAVLRRWQEAQESNRTLVTEREFAL HHHHHHCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHH VESALQRITDQLRRQRSNLPGRPDSYVRSRKNIVEALNHEIENIRTTRERLASLRHRRLT HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC TTDVYGSLAEQPERLAESLPRWRLHPENLATEQLAMAPEAAEDDPLLVTLYGHRIGAPHT HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCC FDIDSII CCHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA