Click here to switch to the map view.

The map label for this gene is sctQ

Identifier: 76819487

GI number: 76819487

Start: 597729

End: 599036

Strand: Direct

Name: sctQ

Synonym: BURPS1710b_A0429

Alternate gene names: NA

Gene position: 597729-599036 (Clockwise)

Preceding gene: 76818195

Following gene: 76818756

Centisome position: 18.79

GC content: 65.14

Gene sequence:

>1308_bases
GTGGTAATCCGCTCTCAACGCATGGCCTCACCCTTCTCCGTCGATCCGAATGCCGACCCGCCCTGCGGCGTCGCCACTCG
CCAGCCGGGCAATCGATCAAACGCATTCGACGGCCCGGCGAATCGATCGGCGCCGCCCCAATCCACTGCACGACAAAATG
CGGCAACCGGCATTGCGCCGCTGTCGCCGGTTCGGGTCGAACCCGCTGTCGCACGTGCATCGAGAACCGTGTTCGACGCC
CGCCTTGAGGCACTCGCCGCATCCGTGTCCGGCCTCGCGTCGTGGCATGTTTCGGTGGTCGACAACGCGCATGTTTTCAT
CGATCGCCTCGTCGACGCGGCGGTGATTGAACTGTCGATCGGGCCGTCGGGAGGAATGGGCGGATTTCCCTTGTTCATCG
CGATCGATCTCGACGCACACCCCGATCTCGGCATCGCTGCCTACCCCGAGCGTGACGCCGTGTGCGCACACCGCGAGGCA
TCCGAGTCAGTCGCGCTCAGACAAGCCGTCTCCGGCATCTTGCTCGAACCGCTCGTCAAGTGTCTCGATCGTTTCGGACT
CTGCTCGCCGAGCGTCGTCTCGATCACGCGGCCGCGCCCCGTCGATCGCGCCGGCGACTGGCGCGACCAACCCGCAGTCG
AACTGACGCTGGCGCTCGATGAGCGCCGCGTCGCCTGCGCGATCAGCCTGCCGATGCGGGGCTACGACATCGTCGACGCG
CTGCTGCGCACGCAACCCACGCCTCGCAAGCCGGCCATGTCGATACCGGGTGCGCTGATCATCGGCGCGCGGCCGCTGGC
GGTCGACACGCTCAACGTCCTGGAAGCCGGCGATGTCCTGTTACGAGGCCTCTTTCCACACTTCAACGCGACACTGCTCT
CGACGGGCACGCGCGCCACCGAATCCCTGCGTGCCGTGGCGGCATGGGGCGCGCGAGGACACGTGCGCCTTCACGCAGCA
GTACAAGTCGACGTTCGATCGTTCGTCATCTCCAAGGAGCTTTCCATGTCGGAAGAAGTAGACCAGGCAAGTGCCGGCCT
CGGCGTCGTCACAACCGACGAACCCACCCGGATCGGCGAACTCGAACTCCCCGTGCAGTTCGAAATCGACACCGTTTCGC
TGCCCATCGATCAGTTGTCGGCGCTCGAACCCGGCTATGTCATCGAGCTCCCGGTCGCGGTGACGGACGCGCGGTTGCGG
CTCGTCGTCCATGGTCAGACCGTCGGCTATGGGGAGCTCGTGGCTGTCGGCGAGCATCTCGGCGTTCGCATCATTCGAAT
GGCTCATCGACATGGTACAGTTCAGTGA

Upstream 100 bases:

>100_bases
AAACGCGTGATTTACTCTTGACGCATCGCTCGCTGCTCGAACGCGAACTCGACGAAGTGATGCGCTGTTGGGGCGAAGCT
CGCGACATCCAGCTATCCGT

Downstream 100 bases:

>100_bases
CATCACCGGGCTGCTGCTCGTTGTCATCGCAATCAGCTTGTTGCCGTTCATTGCGATGGTCGTGACGTCGTATGCGAAGA
TCGTCGTCGTGCTGGGGCTT

Product: SctQ

Products: NA

Alternate protein names: HrcQ Protein; Hrp Protein Hrcq; Type III Secretion Apparatus Protein SctQ; Surface Presentation Of Antigens Domain-Containing Protein; Type III Secretion Inner Membrane Protein SctQ; Flagellar Motor Switch/Type III Secretory Pathway Protein; Hrp Conserved Protein HRCQ; Type III Secretion System Apparatus Protein Hrcq

Number of amino acids: Translated: 435; Mature: 435

Protein sequence:

>435_residues
MVIRSQRMASPFSVDPNADPPCGVATRQPGNRSNAFDGPANRSAPPQSTARQNAATGIAPLSPVRVEPAVARASRTVFDA
RLEALAASVSGLASWHVSVVDNAHVFIDRLVDAAVIELSIGPSGGMGGFPLFIAIDLDAHPDLGIAAYPERDAVCAHREA
SESVALRQAVSGILLEPLVKCLDRFGLCSPSVVSITRPRPVDRAGDWRDQPAVELTLALDERRVACAISLPMRGYDIVDA
LLRTQPTPRKPAMSIPGALIIGARPLAVDTLNVLEAGDVLLRGLFPHFNATLLSTGTRATESLRAVAAWGARGHVRLHAA
VQVDVRSFVISKELSMSEEVDQASAGLGVVTTDEPTRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAVTDARLR
LVVHGQTVGYGELVAVGEHLGVRIIRMAHRHGTVQ

Sequences:

>Translated_435_residues
MVIRSQRMASPFSVDPNADPPCGVATRQPGNRSNAFDGPANRSAPPQSTARQNAATGIAPLSPVRVEPAVARASRTVFDA
RLEALAASVSGLASWHVSVVDNAHVFIDRLVDAAVIELSIGPSGGMGGFPLFIAIDLDAHPDLGIAAYPERDAVCAHREA
SESVALRQAVSGILLEPLVKCLDRFGLCSPSVVSITRPRPVDRAGDWRDQPAVELTLALDERRVACAISLPMRGYDIVDA
LLRTQPTPRKPAMSIPGALIIGARPLAVDTLNVLEAGDVLLRGLFPHFNATLLSTGTRATESLRAVAAWGARGHVRLHAA
VQVDVRSFVISKELSMSEEVDQASAGLGVVTTDEPTRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAVTDARLR
LVVHGQTVGYGELVAVGEHLGVRIIRMAHRHGTVQ
>Mature_435_residues
MVIRSQRMASPFSVDPNADPPCGVATRQPGNRSNAFDGPANRSAPPQSTARQNAATGIAPLSPVRVEPAVARASRTVFDA
RLEALAASVSGLASWHVSVVDNAHVFIDRLVDAAVIELSIGPSGGMGGFPLFIAIDLDAHPDLGIAAYPERDAVCAHREA
SESVALRQAVSGILLEPLVKCLDRFGLCSPSVVSITRPRPVDRAGDWRDQPAVELTLALDERRVACAISLPMRGYDIVDA
LLRTQPTPRKPAMSIPGALIIGARPLAVDTLNVLEAGDVLLRGLFPHFNATLLSTGTRATESLRAVAAWGARGHVRLHAA
VQVDVRSFVISKELSMSEEVDQASAGLGVVTTDEPTRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAVTDARLR
LVVHGQTVGYGELVAVGEHLGVRIIRMAHRHGTVQ

Specific function: Unknown

COG id: COG1886

COG function: function code NU; Flagellar motor switch/type III secretory pathway protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 46228; Mature: 46228

Theoretical pI: Translated: 6.14; Mature: 6.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVIRSQRMASPFSVDPNADPPCGVATRQPGNRSNAFDGPANRSAPPQSTARQNAATGIAP
CEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCC
LSPVRVEPAVARASRTVFDARLEALAASVSGLASWHVSVVDNAHVFIDRLVDAAVIELSI
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCHHHHHHHHHCEEEEEEEE
GPSGGMGGFPLFIAIDLDAHPDLGIAAYPERDAVCAHREASESVALRQAVSGILLEPLVK
CCCCCCCCCEEEEEEEECCCCCCCEEECCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHH
CLDRFGLCSPSVVSITRPRPVDRAGDWRDQPAVELTLALDERRVACAISLPMRGYDIVDA
HHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEECCCCCHHHHHH
LLRTQPTPRKPAMSIPGALIIGARPLAVDTLNVLEAGDVLLRGLFPHFNATLLSTGTRAT
HHHCCCCCCCCCCCCCCEEEECCCCCEEHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHH
ESLRAVAAWGARGHVRLHAAVQVDVRSFVISKELSMSEEVDQASAGLGVVTTDEPTRIGE
HHHHHHHHCCCCCEEEEEEEEEEEHHHHHHHHHCCHHHHHHHHHCCCEEEECCCCCCCCE
LELPVQFEIDTVSLPIDQLSALEPGYVIELPVAVTDARLRLVVHGQTVGYGELVAVGEHL
EECCEEEEEEEEECCHHHHHCCCCCEEEEEEEEEECCEEEEEEECCCCCCCHHEEEHHHH
GVRIIRMAHRHGTVQ
CEEEEEEHHHCCCCC
>Mature Secondary Structure
MVIRSQRMASPFSVDPNADPPCGVATRQPGNRSNAFDGPANRSAPPQSTARQNAATGIAP
CEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCC
LSPVRVEPAVARASRTVFDARLEALAASVSGLASWHVSVVDNAHVFIDRLVDAAVIELSI
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCHHHHHHHHHCEEEEEEEE
GPSGGMGGFPLFIAIDLDAHPDLGIAAYPERDAVCAHREASESVALRQAVSGILLEPLVK
CCCCCCCCCEEEEEEEECCCCCCCEEECCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHH
CLDRFGLCSPSVVSITRPRPVDRAGDWRDQPAVELTLALDERRVACAISLPMRGYDIVDA
HHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEECCCCCHHHHHH
LLRTQPTPRKPAMSIPGALIIGARPLAVDTLNVLEAGDVLLRGLFPHFNATLLSTGTRAT
HHHCCCCCCCCCCCCCCEEEECCCCCEEHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHH
ESLRAVAAWGARGHVRLHAAVQVDVRSFVISKELSMSEEVDQASAGLGVVTTDEPTRIGE
HHHHHHHHCCCCCEEEEEEEEEEEHHHHHHHHHCCHHHHHHHHHCCCEEEECCCCCCCCE
LELPVQFEIDTVSLPIDQLSALEPGYVIELPVAVTDARLRLVVHGQTVGYGELVAVGEHL
EECCEEEEEEEEECCHHHHHCCCCCEEEEEEEEEECCEEEEEEECCCCCCCHHEEEHHHH
GVRIIRMAHRHGTVQ
CEEEEEEHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA