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The map label for this gene is rpoE6 [H]

Identifier: 76819323

GI number: 76819323

Start: 422311

End: 422817

Strand: Direct

Name: rpoE6 [H]

Synonym: BURPS1710b_A0278

Alternate gene names: 76819323

Gene position: 422311-422817 (Clockwise)

Preceding gene: 76817738

Following gene: 76817975

Centisome position: 13.27

GC content: 64.89

Gene sequence:

>507_bases
ATGACCGGTGCAGATATCGCTTCTACACTTCCGCCGTTGCTACCCCGTCTGCTCGCCTTCGCTCGCCGCCTCTGCGGCGA
TACGCACGACGCCGATGATCTGGTGCAGCGTGCGTGCCTGAGGGCGCTCGAGCGCCCTCATCAATTGCAGCGGGATACGT
CGCCGCTCAATTGGATGATGGCGATCGTGCATTCGAGCTGGATGAGCGAATTGCGCGCGAGGCATGTGCGGCATCGATTG
CAAACCGACTGGAACGACGACGTCATCGACGCGCTGCCCGGGCCGACGGCCGCCGATCCGCAAATCCACGCGATGAATGC
GCAGATCATTCGCGCCGTCGAATTGCTGCCTGAAACACTGCGCGCGGCGATGCTGCTGATTGCCGTCGAAGGGCTGAGCT
ACCAGGAAGCGGCCGGCGTGCTCGACGTGCCGATCGGAACCGTGATGAGCCGCCTGTGGCGCGCGCGCCAATCCATCGGC
GCGCAGTTCGGCGCGCGCGAGCGCTAG

Upstream 100 bases:

>100_bases
CGCGAGCGAATAAATCGCTGTTGCAGCGAAGGCTGCGCAATGGACTTGCCTAGGGGGCGACCTGTGTGTCGTATCTTCGT
TCATGGAGGAAGCCGCATTT

Downstream 100 bases:

>100_bases
CCGCCCGTGCGCGAGCGCGGCCGAGCACGCGCGAGAGGGCACGAATCTCGCGCAAGACGATGCGCCGATCGGAACGAACG
TGGAGGTCGGTCGGCCGCGT

Product: ECF subfamily RNA polymerase sigma factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 168; Mature: 167

Protein sequence:

>168_residues
MTGADIASTLPPLLPRLLAFARRLCGDTHDADDLVQRACLRALERPHQLQRDTSPLNWMMAIVHSSWMSELRARHVRHRL
QTDWNDDVIDALPGPTAADPQIHAMNAQIIRAVELLPETLRAAMLLIAVEGLSYQEAAGVLDVPIGTVMSRLWRARQSIG
AQFGARER

Sequences:

>Translated_168_residues
MTGADIASTLPPLLPRLLAFARRLCGDTHDADDLVQRACLRALERPHQLQRDTSPLNWMMAIVHSSWMSELRARHVRHRL
QTDWNDDVIDALPGPTAADPQIHAMNAQIIRAVELLPETLRAAMLLIAVEGLSYQEAAGVLDVPIGTVMSRLWRARQSIG
AQFGARER
>Mature_167_residues
TGADIASTLPPLLPRLLAFARRLCGDTHDADDLVQRACLRALERPHQLQRDTSPLNWMMAIVHSSWMSELRARHVRHRLQ
TDWNDDVIDALPGPTAADPQIHAMNAQIIRAVELLPETLRAAMLLIAVEGLSYQEAAGVLDVPIGTVMSRLWRARQSIGA
QFGARER

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in the activation of hprD as well as other hrp loci which are involved in plant pathogenic

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=142, Percent_Identity=29.5774647887324, Blast_Score=64, Evalue=7e-12,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 18728; Mature: 18597

Theoretical pI: Translated: 7.15; Mature: 7.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGADIASTLPPLLPRLLAFARRLCGDTHDADDLVQRACLRALERPHQLQRDTSPLNWMM
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
AIVHSSWMSELRARHVRHRLQTDWNDDVIDALPGPTAADPQIHAMNAQIIRAVELLPETL
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
RAAMLLIAVEGLSYQEAAGVLDVPIGTVMSRLWRARQSIGAQFGARER
HHHHHHHHHHCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
TGADIASTLPPLLPRLLAFARRLCGDTHDADDLVQRACLRALERPHQLQRDTSPLNWMM
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
AIVHSSWMSELRARHVRHRLQTDWNDDVIDALPGPTAADPQIHAMNAQIIRAVELLPETL
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
RAAMLLIAVEGLSYQEAAGVLDVPIGTVMSRLWRARQSIGAQFGARER
HHHHHHHHHHCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8106313 [H]