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The map label for this gene is sqs [H]

Identifier: 76819243

GI number: 76819243

Start: 2153313

End: 2154854

Strand: Direct

Name: sqs [H]

Synonym: BURPS1710b_A1762

Alternate gene names: 76819243

Gene position: 2153313-2154854 (Clockwise)

Preceding gene: 76818987

Following gene: 76817301

Centisome position: 67.68

GC content: 69.33

Gene sequence:

>1542_bases
GTGCGGTGCGCGCGCCGTTTACTTCGCGGTTTCGTCGAGGCCGCGTTGCAACAGTTCGGTCAACAATCCGGTCATCCCGT
CCGGATGCGCGGCCGCCCGCTCGTTCAGGCGCGCGACGAGCTCGATGTTCAGCTTGCACGCGAACGGCACGAGGCCCTGC
GCCTGTTCGAGCCTGCGCCGCTCGCGGCGATCGGCCGCCGCATCTTCGGCGCCCTTGCCGAAGCGCGCGGATGTCGTCTG
CTTCATCGCGTGCGTCAGCTTCAACGCCTTGTTCTTCTCGAGATCGGTTTTCTTCATCGCCATCGCGGTCACCTCTTGCA
GGAAAGGATGCGATTGTACGCATTGCCGCGCGGCGCGGATATCGGCCGCCGCGCGCCGTGCGGCGCGCCCGGTCGCACCC
TGCGCGGCCGGCCGTGCGCGAAGCGCCGGCGGCCCGCGCGCATTTGCCGATACAATGCGGCAGCCATTCGTATGACCGAC
CTGATCCGATCCATGGGCAATTCCACCCGAGCCTTTCTGCTGGGCCCCCTGCTGAAGGGCGTGTCGCGCTCCTTCTATCT
GACGTTGCGCGTGCTGCCGCAAGGCATGCGCGACCCGATCGGCCTTGCGTATCTGCTCGCGCGCGCGGCCGACACGATCG
CCGACACGTCGCTGATCCCGCCCGCTCAGCGGCTCGAACTGCTGCTGTCGCTGCGCGCGCAGATCAACGGCGCGCCCGAT
CCGCACGCGCTCGCGCGGATCGCGGGCGAGGTCGCGGGGCAGCAGGCGCAGACGGACGAGAAGACGCTGCTCGAATCGCT
CGGCCCCGCGCTCGCGGTGCTGTCGCAATTGAGCGCGCCCGATCGCGCCGCGGTGCGCGGCGTCGTCACCACGCTCACCG
AAGGGATGGAATTCGATTTGCGCACGTTCCCGGACGAATCGTCGGGCCGCGTCGTCGCGCTGCGGGAATGGCCGGCGCTC
GATCGCTATACGTATCTCGTTGCCGGCTGCGTCGGCGAATTCTGGACGAAGATGACGTGCGCGCATCTGCCCGGGCTGCT
GACCGAGCGGGAGGACACGATGAGCGAGCGCGGCATCCGCTTCGGCAAGGCGCTGCAGATGACCAACGTGCTGCGCGACT
GCGGCAGGGACCTGCGGATCGGCCGCTGCTATCTGCCGCAGGCGATGCTGGACGAATACGGGCTGCGCGCGGAGGATCTG
CTGGGGCCGGGCGCTTCGCTGCGCGCACGGCCGCTGATGCATGCGCTCGTGCGCACGACGCTCGCGCATTTTCACGCGGG
CATCGATTATACGTTCGCGATTCCGCGCCGCGCGCCGCGCCTGCGGCTTGCCTGTTTCTGGCCGATCGCGATCGGCCTGC
GGACGCTCGCGCTGCTCGCGTCGAACGACGCGTGGCTCGATCCGGCGCGCGCGTCGAAGGTGCGGCGCGGCGACGTCTAC
CGGATCCTCGCGTATTCGCTGCCGCTCGCGATGTCGAACGGCGCGCTGCGCGCGTGGCTCGACCGCCTGATCGCGGACGT
CGAGGCGCGGCTCATCGCGTGA

Upstream 100 bases:

>100_bases
CCTGTTTTCGAAGAGTCGACGAACGGGGTGTTGCGCAGCTGCGTTTTCAGCATAGGCCGAAAACGCGGCGGCGCCCCTGC
GCAACGTCGCCGTGTGCGCC

Downstream 100 bases:

>100_bases
TGCGCGGCGCGCCCGGCCGCGCGCGTCACGGACGCGTCCACGCCGCCGCCTTTTGCGCGGCATTCCCGCCGCCGAGCGCG
TCGATCAGATAATCGACGAA

Product: squalene/phytoene synthase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 513; Mature: 513

Protein sequence:

>513_residues
MRCARRLLRGFVEAALQQFGQQSGHPVRMRGRPLVQARDELDVQLARERHEALRLFEPAPLAAIGRRIFGALAEARGCRL
LHRVRQLQRLVLLEIGFLHRHRGHLLQERMRLYALPRGADIGRRAPCGAPGRTLRGRPCAKRRRPARICRYNAAAIRMTD
LIRSMGNSTRAFLLGPLLKGVSRSFYLTLRVLPQGMRDPIGLAYLLARAADTIADTSLIPPAQRLELLLSLRAQINGAPD
PHALARIAGEVAGQQAQTDEKTLLESLGPALAVLSQLSAPDRAAVRGVVTTLTEGMEFDLRTFPDESSGRVVALREWPAL
DRYTYLVAGCVGEFWTKMTCAHLPGLLTEREDTMSERGIRFGKALQMTNVLRDCGRDLRIGRCYLPQAMLDEYGLRAEDL
LGPGASLRARPLMHALVRTTLAHFHAGIDYTFAIPRRAPRLRLACFWPIAIGLRTLALLASNDAWLDPARASKVRRGDVY
RILAYSLPLAMSNGALRAWLDRLIADVEARLIA

Sequences:

>Translated_513_residues
MRCARRLLRGFVEAALQQFGQQSGHPVRMRGRPLVQARDELDVQLARERHEALRLFEPAPLAAIGRRIFGALAEARGCRL
LHRVRQLQRLVLLEIGFLHRHRGHLLQERMRLYALPRGADIGRRAPCGAPGRTLRGRPCAKRRRPARICRYNAAAIRMTD
LIRSMGNSTRAFLLGPLLKGVSRSFYLTLRVLPQGMRDPIGLAYLLARAADTIADTSLIPPAQRLELLLSLRAQINGAPD
PHALARIAGEVAGQQAQTDEKTLLESLGPALAVLSQLSAPDRAAVRGVVTTLTEGMEFDLRTFPDESSGRVVALREWPAL
DRYTYLVAGCVGEFWTKMTCAHLPGLLTEREDTMSERGIRFGKALQMTNVLRDCGRDLRIGRCYLPQAMLDEYGLRAEDL
LGPGASLRARPLMHALVRTTLAHFHAGIDYTFAIPRRAPRLRLACFWPIAIGLRTLALLASNDAWLDPARASKVRRGDVY
RILAYSLPLAMSNGALRAWLDRLIADVEARLIA
>Mature_513_residues
MRCARRLLRGFVEAALQQFGQQSGHPVRMRGRPLVQARDELDVQLARERHEALRLFEPAPLAAIGRRIFGALAEARGCRL
LHRVRQLQRLVLLEIGFLHRHRGHLLQERMRLYALPRGADIGRRAPCGAPGRTLRGRPCAKRRRPARICRYNAAAIRMTD
LIRSMGNSTRAFLLGPLLKGVSRSFYLTLRVLPQGMRDPIGLAYLLARAADTIADTSLIPPAQRLELLLSLRAQINGAPD
PHALARIAGEVAGQQAQTDEKTLLESLGPALAVLSQLSAPDRAAVRGVVTTLTEGMEFDLRTFPDESSGRVVALREWPAL
DRYTYLVAGCVGEFWTKMTCAHLPGLLTEREDTMSERGIRFGKALQMTNVLRDCGRDLRIGRCYLPQAMLDEYGLRAEDL
LGPGASLRARPLMHALVRTTLAHFHAGIDYTFAIPRRAPRLRLACFWPIAIGLRTLALLASNDAWLDPARASKVRRGDVY
RILAYSLPLAMSNGALRAWLDRLIADVEARLIA

Specific function: Catalyzes the reaction from prephytoene diphosphate to phytoene [H]

COG id: COG1562

COG function: function code I; Phytoene/squalene synthetase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phytoene/squalene synthase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002060
- InterPro:   IPR019845
- InterPro:   IPR008949 [H]

Pfam domain/function: PF00494 SQS_PSY [H]

EC number: =2.5.1.32 [H]

Molecular weight: Translated: 57122; Mature: 57122

Theoretical pI: Translated: 11.36; Mature: 11.36

Prosite motif: PS00018 EF_HAND_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRCARRLLRGFVEAALQQFGQQSGHPVRMRGRPLVQARDELDVQLARERHEALRLFEPAP
CHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
LAAIGRRIFGALAEARGCRLLHRVRQLQRLVLLEIGFLHRHRGHLLQERMRLYALPRGAD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
IGRRAPCGAPGRTLRGRPCAKRRRPARICRYNAAAIRMTDLIRSMGNSTRAFLLGPLLKG
CCCCCCCCCCCCCCCCCCCHHHCCCHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHH
VSRSFYLTLRVLPQGMRDPIGLAYLLARAADTIADTSLIPPAQRLELLLSLRAQINGAPD
CCHHHEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCC
PHALARIAGEVAGQQAQTDEKTLLESLGPALAVLSQLSAPDRAAVRGVVTTLTEGMEFDL
HHHHHHHHHHHHCCCCCCHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCH
RTFPDESSGRVVALREWPALDRYTYLVAGCVGEFWTKMTCAHLPGLLTEREDTMSERGIR
HCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHHHCCCH
FGKALQMTNVLRDCGRDLRIGRCYLPQAMLDEYGLRAEDLLGPGASLRARPLMHALVRTT
HHHHHHHHHHHHHCCCCCCCCHHCCCHHHHHHHCCCHHHHCCCCCCCHHHHHHHHHHHHH
LAHFHAGIDYTFAIPRRAPRLRLACFWPIAIGLRTLALLASNDAWLDPARASKVRRGDVY
HHHHHCCCCEEEECCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCHH
RILAYSLPLAMSNGALRAWLDRLIADVEARLIA
HHHHHHHCHHHCCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRCARRLLRGFVEAALQQFGQQSGHPVRMRGRPLVQARDELDVQLARERHEALRLFEPAP
CHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
LAAIGRRIFGALAEARGCRLLHRVRQLQRLVLLEIGFLHRHRGHLLQERMRLYALPRGAD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
IGRRAPCGAPGRTLRGRPCAKRRRPARICRYNAAAIRMTDLIRSMGNSTRAFLLGPLLKG
CCCCCCCCCCCCCCCCCCCHHHCCCHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHH
VSRSFYLTLRVLPQGMRDPIGLAYLLARAADTIADTSLIPPAQRLELLLSLRAQINGAPD
CCHHHEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCC
PHALARIAGEVAGQQAQTDEKTLLESLGPALAVLSQLSAPDRAAVRGVVTTLTEGMEFDL
HHHHHHHHHHHHCCCCCCHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCH
RTFPDESSGRVVALREWPALDRYTYLVAGCVGEFWTKMTCAHLPGLLTEREDTMSERGIR
HCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHHHCCCH
FGKALQMTNVLRDCGRDLRIGRCYLPQAMLDEYGLRAEDLLGPGASLRARPLMHALVRTT
HHHHHHHHHHHHHCCCCCCCCHHCCCHHHHHHHCCCHHHHCCCCCCCHHHHHHHHHHHHH
LAHFHAGIDYTFAIPRRAPRLRLACFWPIAIGLRTLALLASNDAWLDPARASKVRRGDVY
HHHHHCCCCEEEECCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCHH
RILAYSLPLAMSNGALRAWLDRLIADVEARLIA
HHHHHHHCHHHCCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7592436 [H]