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The map label for this gene is sctU [H]

Identifier: 76819009

GI number: 76819009

Start: 593861

End: 594919

Strand: Direct

Name: sctU [H]

Synonym: BURPS1710b_A0427

Alternate gene names: 76819009

Gene position: 593861-594919 (Clockwise)

Preceding gene: 76819254

Following gene: 76818195

Centisome position: 18.66

GC content: 63.08

Gene sequence:

>1059_bases
ATGAGCGACGAAAAGACCGAGGAACCCACCGACAAGAAGCTGCGTGACGCGCGTCGAGACGGTGAGGTATCCCGTAGCAC
GGATCTCTCCGACGCCGTATCCATGTCCGCTGCGATTCTGTTGCTGGTTGCGGCCGCCGATCATTTCGGCGATGCAATGC
GAGCGTTGGTCAACGGCGCGCTAGCGTTCGTCTCCGCCGATCATTCGCTCGTCGAGATGACCGCGCGGCTGTACCAGTTC
GGCGGCATCGCGCTATCGGCGGTCATGCCGCTGCTGTTCGTCGCGGCGCTCGCGGGTATCGGCGGCTCGGTCCTCCAGGT
CGGGCTGCAGATATCGCTGAAACCGGTCATGCCGAATCTCGGCGCACTCAATCCGGCTGAAGGTCTGAAGAAGCTTTTTT
CGCCGCGTAGCGCGATCGAGTCCATCAAGATGATCGTCAAGGCCGTCATCGTGTTCTGCGTGGCGTGGAAAACGATCGTA
TGGCTGTTCCCGCTCATCGCCGGCGCGCTGTATCAATCGCCGCCCGAACTGTCACGCATATTCCGGGAGATTCTGGCGAA
GTGGCTGATGGTGGTGGCCGGTCTATGCCTTCTGATGGGGGCGGCCGACGTGAAGCTCCAGCGCTTCATGTTCATGCAAA
AGATGAAGATGACGAAGGACGAGGTGAAGCGCGAATCCAAAAACGACGAAGGCGATCCGCTGCTCAAGGGCGAGCGCAAG
CGGCTTGCGCGCGAACTGGCGGCCGCACCGCCGCAGCATCAGGTCGCGCACGCGAATTTCGTCGTCGTCAACCCCACCCA
CTACGCGGTCGCGGTTCGTTACGCGCCCGACGAGCATCCGCTCCCCCGCGTGATCGCGAAGGGCCTCGACGAAGCGGCCA
TCGCACTGCGGCGAGCCGCGCAAGACGCGAACATCCCGATCATCGGCAATCCCCCTGTCGCGCGCGCGTTGTTCCGAATC
GGCGTCGAGGAGCCGGTGCCCGAAGAACTGTTCGAGATCGTTGCAGCGATCCTGCGCTGGATCGACGCGATCGGCCCGCG
CCGAAACGAACGGGCCTGA

Upstream 100 bases:

>100_bases
CGAGTTCGTATGAACCGCGCATCTTTCACCGTGCGACTGTTAAGGTATCCTCGACCGGCGCGCCGAACGCGATGCCGGCA
TCCGATAGCCGAGCCGACGC

Downstream 100 bases:

>100_bases
TTCGCCGGAGCGTCCATGTTCAAATCGCTGAAACTGCCCGCGGGCGGTGAAATCGGAATCGTCGCCCTGGTCATCGCGAT
CATCTCGCTGATGATACTGC

Product: type III secretion system protein HrcU

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 352; Mature: 351

Protein sequence:

>352_residues
MSDEKTEEPTDKKLRDARRDGEVSRSTDLSDAVSMSAAILLLVAAADHFGDAMRALVNGALAFVSADHSLVEMTARLYQF
GGIALSAVMPLLFVAALAGIGGSVLQVGLQISLKPVMPNLGALNPAEGLKKLFSPRSAIESIKMIVKAVIVFCVAWKTIV
WLFPLIAGALYQSPPELSRIFREILAKWLMVVAGLCLLMGAADVKLQRFMFMQKMKMTKDEVKRESKNDEGDPLLKGERK
RLARELAAAPPQHQVAHANFVVVNPTHYAVAVRYAPDEHPLPRVIAKGLDEAAIALRRAAQDANIPIIGNPPVARALFRI
GVEEPVPEELFEIVAAILRWIDAIGPRRNERA

Sequences:

>Translated_352_residues
MSDEKTEEPTDKKLRDARRDGEVSRSTDLSDAVSMSAAILLLVAAADHFGDAMRALVNGALAFVSADHSLVEMTARLYQF
GGIALSAVMPLLFVAALAGIGGSVLQVGLQISLKPVMPNLGALNPAEGLKKLFSPRSAIESIKMIVKAVIVFCVAWKTIV
WLFPLIAGALYQSPPELSRIFREILAKWLMVVAGLCLLMGAADVKLQRFMFMQKMKMTKDEVKRESKNDEGDPLLKGERK
RLARELAAAPPQHQVAHANFVVVNPTHYAVAVRYAPDEHPLPRVIAKGLDEAAIALRRAAQDANIPIIGNPPVARALFRI
GVEEPVPEELFEIVAAILRWIDAIGPRRNERA
>Mature_351_residues
SDEKTEEPTDKKLRDARRDGEVSRSTDLSDAVSMSAAILLLVAAADHFGDAMRALVNGALAFVSADHSLVEMTARLYQFG
GIALSAVMPLLFVAALAGIGGSVLQVGLQISLKPVMPNLGALNPAEGLKKLFSPRSAIESIKMIVKAVIVFCVAWKTIVW
LFPLIAGALYQSPPELSRIFREILAKWLMVVAGLCLLMGAADVKLQRFMFMQKMKMTKDEVKRESKNDEGDPLLKGERKR
LARELAAAPPQHQVAHANFVVVNPTHYAVAVRYAPDEHPLPRVIAKGLDEAAIALRRAAQDANIPIIGNPPVARALFRIG
VEEPVPEELFEIVAAILRWIDAIGPRRNERA

Specific function: Involved in the secretion of popA, a proteinaceous elicitor of the hypersensitivity response in plants [H]

COG id: COG1377

COG function: function code NU; Flagellar biosynthesis pathway, component FlhB

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the type III secretion exporter family [H]

Homologues:

Organism=Escherichia coli, GI1788188, Length=346, Percent_Identity=28.9017341040462, Blast_Score=150, Evalue=2e-37,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006135
- InterPro:   IPR006307 [H]

Pfam domain/function: PF01312 Bac_export_2 [H]

EC number: NA

Molecular weight: Translated: 38405; Mature: 38273

Theoretical pI: Translated: 9.39; Mature: 9.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDEKTEEPTDKKLRDARRDGEVSRSTDLSDAVSMSAAILLLVAAADHFGDAMRALVNGA
CCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAFVSADHSLVEMTARLYQFGGIALSAVMPLLFVAALAGIGGSVLQVGLQISLKPVMPNL
HHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHEEECCCCCC
GALNPAEGLKKLFSPRSAIESIKMIVKAVIVFCVAWKTIVWLFPLIAGALYQSPPELSRI
CCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
FREILAKWLMVVAGLCLLMGAADVKLQRFMFMQKMKMTKDEVKRESKNDEGDPLLKGERK
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH
RLARELAAAPPQHQVAHANFVVVNPTHYAVAVRYAPDEHPLPRVIAKGLDEAAIALRRAA
HHHHHHHCCCCCCHHHHCCEEEECCCEEEEEEEECCCCCCHHHHHHCCCHHHHHHHHHHH
QDANIPIIGNPPVARALFRIGVEEPVPEELFEIVAAILRWIDAIGPRRNERA
CCCCCCEECCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
SDEKTEEPTDKKLRDARRDGEVSRSTDLSDAVSMSAAILLLVAAADHFGDAMRALVNGA
CCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAFVSADHSLVEMTARLYQFGGIALSAVMPLLFVAALAGIGGSVLQVGLQISLKPVMPNL
HHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHEEECCCCCC
GALNPAEGLKKLFSPRSAIESIKMIVKAVIVFCVAWKTIVWLFPLIAGALYQSPPELSRI
CCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
FREILAKWLMVVAGLCLLMGAADVKLQRFMFMQKMKMTKDEVKRESKNDEGDPLLKGERK
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH
RLARELAAAPPQHQVAHANFVVVNPTHYAVAVRYAPDEHPLPRVIAKGLDEAAIALRRAA
HHHHHHHCCCCCCHHHHCCEEEECCCEEEEEEEECCCCCCHHHHHHCCCHHHHHHHHHHH
QDANIPIIGNPPVARALFRIGVEEPVPEELFEIVAAILRWIDAIGPRRNERA
CCCCCCEECCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8316211; 11823852 [H]