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The map label for this gene is rbsC [H]

Identifier: 76818994

GI number: 76818994

Start: 2180850

End: 2183357

Strand: Direct

Name: rbsC [H]

Synonym: BURPS1710b_A1792

Alternate gene names: 76818994

Gene position: 2180850-2183357 (Clockwise)

Preceding gene: 76818828

Following gene: 76819561

Centisome position: 68.54

GC content: 69.58

Gene sequence:

>2508_bases
GTGAATGAGCAAAAGCTCAGTCACTCTCCGGGATACGACCGTGACTCCTGTTCTGCTCGAAGCAAGCCAGGTGGCGAAGC
GATTCAACGGCGTGAGCGCGTTGCGCGACGGACGCCTGAGCCTTGCGGCCGGCCGCGTGCATGCGCTGTGCGGCGGCAAC
GGCACCGGAAAATCCACGTTCCTGAACATCCTGATGGGGCTTTTGCGCCGCGACGAGGGCACGATCCGGCTGAACGGCCG
CGATGTCGATTTCGCGTCGCCCGCCGAAGCGCTCGCAAGCCGCATGGCGATCATCACGCAGGAGCTCTCGCCGGTGCCGG
GGATGACGGTCGCCGAGAACCTGTATCTTGGCCGCGAGCCCACCCGCGCGGGCGTCGTCGTCGATTTCCGCGCGCTGAAG
CGCCGCGCGCAGGCGCTGCTCGACCGGCTCGGCTTCGCGATCGACGCGGGCGCGCCGATGCATCGGCTGAGCCTCGCGCA
GACGCAGCTCGTCGAGATCGCGAAAGCGTTCAGCCACGATTGCCAGGTGATGATCATGGACGAGCCGACTTCCGCGATCG
GCGAGCGCGAGACCGAGACGCTGTTCGCCGCGGTCCGCAACGTCACCGCGCACGGCGCGGGCATCATCTACGTGTCGCAC
CGGCTGAGCGAGCTATTCGACATCGCCGACGACTACACGGTGTTTCGCGACGGCGCGTACGTCGAGAGCGGCCGCCTCGC
CGATATCGACCGCGCGCATCTCGTGCGCGCGATCGTCGGCCGCGAGATGCCCGTCGTCGACAAGGCGCGCCGGCCCGCGC
ACGGCGAGCCGTGCCTGAAGGTGGAGGGCCTCACGCGCGCGAACGAGTTCGAGGACGTGAGCCTCGACGTGCGGCGCGGC
GAGATTCTCGGCATCTATGGGCTGATGGGCTCGGGCCGCAGCGAATTCCTCAATTGCGTGTATGGCTTGACGCGCCCCGA
CGCGGGCGCCGCCACCCTCGGCGGCAAGCCGCTGCCGCACGGCGAGCCCGCGCGGTCGATCCGCGCGGGCATCGCGCTCG
TCACCGAGGACCGCAAGGATTCGGGCCTCGTGCTCTGCGGCAGCGTGCAGGAGAACATCGCGATGGCCGCGTACCGCCGC
CTGTCGCGCGGCGGCGTGATCCGGCGCTCGCTCGTGCGGCGGCTCGCGCAGGCGATGGTCGAGCGGCTGCGGATCAAGGC
CGCTTCGCTGCGCATGCCGGTATCGGCGATGAGCGGCGGCAACCAGCAGAAGGTCGTGCTCGCGAAATGCCTGTCGACCG
CGCCCGTGCTGCTGCTGTGCGACGAGCCGACGCGCGGCATCGACGAAGGCGCGAAACAGGAGATCTACCGGCTGCTCGAT
GCGTTCGCGCGCGACGGCGGCGCGGTGATCGTCGTGTCGTCGGAGGCGCCCGAGCTGCTGTATCTGAGCGACCGGATCGC
CGTGTTCAAGGGCGGCCGCGTCGCCGCCGTCCGCCCGGGCGACGGCGCCACCCAGGAATCCCTGCTCCATCTCGCTTCAT
GAACAAGACCATGAACACTCAGACCCTGTCCCGTCTCGACGCGGCGCCCAGGCGCGTGAACGTCGCGGAGCTCGCGAGCC
GCTTCGGCATCCCGATCGTCTTCGTCGCGCTGTGCGTCGTGCTCGCGTTCGCGAGCCCGTACTTCCTCACCTGGCGCAAC
TGGAGCGACATCCTGCGCCAGACGTCGATCAACGGCATTCTCGCGATCGGCATGACGTACGTGATCCTGACCAAGGGCAT
CGACCTGTCGGTGGGCTCGGTGCTCGCGCTCGCGGGCATCGTGAGCGGCCTCGCCGGCGCGGCGGGGCACGGGCTCGCGG
TGTCGCTCGCGGCCGGCGTCGCGTGCGGCGCGGCGCTCGGCGCGATCAACGGCGTGGCGATCGCGCGCTTGAACGTGCCG
CCGTTCGTCGCGACGCTCGGCATGCTGAGCGTCGCGCGCGGCGTCACGTACATCGCCAACGACGGCAGCCCGGTCGCGAA
CCTGCCCGACGATTACCTGTCGCTCGGCATCGGCAGGCTCGGCCCGCTCGGGATGCCGGTGCTGATCTTCGCGGGCGTCG
CGCTCGCGTGCTGGTGGGTGCTGCGCTACACGACATACGGCCGCTATCTGTATGCGGTCGGCGGCAACGAGAAGAGTGCG
CGCACGTCGGGCATCGGCGTGCGCAAGGTCGTGTTCTCGGTGTACGTCGTCTCGGGCGCGCTCGCCGGCCTCGCGGGGAT
GATCCTCGCCGCGCGCACGACGTCCGCGCTGCCGCAGGCGGGCGTGTCGTACGAGCTCGACGCGATCGCGGCCGTCGTGA
TCGGCGGCACGAGCCTGTCGGGCGGGCAGGGCGGCGTCGTCGGCACGCTGTTCGGCGCGTTGTTGATCGGCGTGATCAAC
AACGGGCTGAACCTGCTCGGCGTGTCGTCGTATTACCAGCAGATCGCGAAGGGACTCATCATCGTGCTGGCCGTGCTCAT
CGACGTGGCCCGCAAACAGCAGCGCTGA

Upstream 100 bases:

>100_bases
ACCGAAAGTAGGGTGGTGTGGTGCATGTCCTAGCGTTTACCAGTAATTGACACGTTAAAAAACCGATGATTACCATGCGT
TCACGCTGTATCAAAACATC

Downstream 100 bases:

>100_bases
CGCAGCGCATTCCCACCCGGAGGAGACGACAATGCAAACACGAAAGACCTGGTTCGGCCGCTTCGCGGCCGCGGCGGCGC
TCGGCGCGACGCTCGCGATC

Product: sugar ABC transporter permease

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 835; Mature: 835

Protein sequence:

>835_residues
MNEQKLSHSPGYDRDSCSARSKPGGEAIQRRERVARRTPEPCGRPRACAVRRQRHRKIHVPEHPDGAFAPRRGHDPAERP
RCRFRVARRSARKPHGDHHAGALAGAGDDGRREPVSWPRAHPRGRRRRFPRAEAPRAGAARPARLRDRRGRADASAEPRA
DAARRDRESVQPRLPGDDHGRADFRDRRARDRDAVRRGPQRHRARRGHHLRVAPAERAIRHRRRLHGVSRRRVRRERPPR
RYRPRASRARDRRPRDARRRQGAPARARRAVPEGGGPHARERVRGREPRRAARRDSRHLWADGLGPQRIPQLRVWLDAPR
RGRRHPRRQAAAARRARAVDPRGHRARHRGPQGFGPRALRQRAGEHRDGRVPPPVARRRDPALARAAARAGDGRAAADQG
RFAAHAGIGDERRQPAEGRAREMPVDRARAAAVRRADARHRRRRETGDLPAARCVRARRRRGDRRVVGGARAAVSERPDR
RVQGRPRRRRPPGRRRHPGIPAPSRFMNKTMNTQTLSRLDAAPRRVNVAELASRFGIPIVFVALCVVLAFASPYFLTWRN
WSDILRQTSINGILAIGMTYVILTKGIDLSVGSVLALAGIVSGLAGAAGHGLAVSLAAGVACGAALGAINGVAIARLNVP
PFVATLGMLSVARGVTYIANDGSPVANLPDDYLSLGIGRLGPLGMPVLIFAGVALACWWVLRYTTYGRYLYAVGGNEKSA
RTSGIGVRKVVFSVYVVSGALAGLAGMILAARTTSALPQAGVSYELDAIAAVVIGGTSLSGGQGGVVGTLFGALLIGVIN
NGLNLLGVSSYYQQIAKGLIIVLAVLIDVARKQQR

Sequences:

>Translated_835_residues
MNEQKLSHSPGYDRDSCSARSKPGGEAIQRRERVARRTPEPCGRPRACAVRRQRHRKIHVPEHPDGAFAPRRGHDPAERP
RCRFRVARRSARKPHGDHHAGALAGAGDDGRREPVSWPRAHPRGRRRRFPRAEAPRAGAARPARLRDRRGRADASAEPRA
DAARRDRESVQPRLPGDDHGRADFRDRRARDRDAVRRGPQRHRARRGHHLRVAPAERAIRHRRRLHGVSRRRVRRERPPR
RYRPRASRARDRRPRDARRRQGAPARARRAVPEGGGPHARERVRGREPRRAARRDSRHLWADGLGPQRIPQLRVWLDAPR
RGRRHPRRQAAAARRARAVDPRGHRARHRGPQGFGPRALRQRAGEHRDGRVPPPVARRRDPALARAAARAGDGRAAADQG
RFAAHAGIGDERRQPAEGRAREMPVDRARAAAVRRADARHRRRRETGDLPAARCVRARRRRGDRRVVGGARAAVSERPDR
RVQGRPRRRRPPGRRRHPGIPAPSRFMNKTMNTQTLSRLDAAPRRVNVAELASRFGIPIVFVALCVVLAFASPYFLTWRN
WSDILRQTSINGILAIGMTYVILTKGIDLSVGSVLALAGIVSGLAGAAGHGLAVSLAAGVACGAALGAINGVAIARLNVP
PFVATLGMLSVARGVTYIANDGSPVANLPDDYLSLGIGRLGPLGMPVLIFAGVALACWWVLRYTTYGRYLYAVGGNEKSA
RTSGIGVRKVVFSVYVVSGALAGLAGMILAARTTSALPQAGVSYELDAIAAVVIGGTSLSGGQGGVVGTLFGALLIGVIN
NGLNLLGVSSYYQQIAKGLIIVLAVLIDVARKQQR
>Mature_835_residues
MNEQKLSHSPGYDRDSCSARSKPGGEAIQRRERVARRTPEPCGRPRACAVRRQRHRKIHVPEHPDGAFAPRRGHDPAERP
RCRFRVARRSARKPHGDHHAGALAGAGDDGRREPVSWPRAHPRGRRRRFPRAEAPRAGAARPARLRDRRGRADASAEPRA
DAARRDRESVQPRLPGDDHGRADFRDRRARDRDAVRRGPQRHRARRGHHLRVAPAERAIRHRRRLHGVSRRRVRRERPPR
RYRPRASRARDRRPRDARRRQGAPARARRAVPEGGGPHARERVRGREPRRAARRDSRHLWADGLGPQRIPQLRVWLDAPR
RGRRHPRRQAAAARRARAVDPRGHRARHRGPQGFGPRALRQRAGEHRDGRVPPPVARRRDPALARAAARAGDGRAAADQG
RFAAHAGIGDERRQPAEGRAREMPVDRARAAAVRRADARHRRRRETGDLPAARCVRARRRRGDRRVVGGARAAVSERPDR
RVQGRPRRRRPPGRRRHPGIPAPSRFMNKTMNTQTLSRLDAAPRRVNVAELASRFGIPIVFVALCVVLAFASPYFLTWRN
WSDILRQTSINGILAIGMTYVILTKGIDLSVGSVLALAGIVSGLAGAAGHGLAVSLAAGVACGAALGAINGVAIARLNVP
PFVATLGMLSVARGVTYIANDGSPVANLPDDYLSLGIGRLGPLGMPVLIFAGVALACWWVLRYTTYGRYLYAVGGNEKSA
RTSGIGVRKVVFSVYVVSGALAGLAGMILAARTTSALPQAGVSYELDAIAAVVIGGTSLSGGQGGVVGTLFGALLIGVIN
NGLNLLGVSSYYQQIAKGLIIVLAVLIDVARKQQR

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=307, Percent_Identity=52.442996742671, Blast_Score=247, Evalue=2e-66,
Organism=Escherichia coli, GI1790524, Length=304, Percent_Identity=38.1578947368421, Blast_Score=167, Evalue=3e-42,
Organism=Escherichia coli, GI1788896, Length=319, Percent_Identity=37.9310344827586, Blast_Score=157, Evalue=3e-39,
Organism=Escherichia coli, GI145693152, Length=302, Percent_Identity=34.1059602649007, Blast_Score=156, Evalue=6e-39,
Organism=Escherichia coli, GI87082395, Length=286, Percent_Identity=40.9090909090909, Blast_Score=151, Evalue=2e-37,
Organism=Escherichia coli, GI145693214, Length=247, Percent_Identity=41.7004048582996, Blast_Score=125, Evalue=9e-30,
Organism=Escherichia coli, GI1788471, Length=312, Percent_Identity=37.1794871794872, Blast_Score=119, Evalue=1e-27,
Organism=Escherichia coli, GI1787793, Length=290, Percent_Identity=33.7931034482759, Blast_Score=114, Evalue=3e-26,
Organism=Escherichia coli, GI1789992, Length=129, Percent_Identity=45.7364341085271, Blast_Score=113, Evalue=4e-26,
Organism=Escherichia coli, GI1787794, Length=280, Percent_Identity=29.6428571428571, Blast_Score=79, Evalue=9e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 91707; Mature: 91707

Theoretical pI: Translated: 12.46; Mature: 12.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNEQKLSHSPGYDRDSCSARSKPGGEAIQRRERVARRTPEPCGRPRACAVRRQRHRKIHV
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCEECC
PEHPDGAFAPRRGHDPAERPRCRFRVARRSARKPHGDHHAGALAGAGDDGRREPVSWPRA
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
HPRGRRRRFPRAEAPRAGAARPARLRDRRGRADASAEPRADAARRDRESVQPRLPGDDHG
CCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC
RADFRDRRARDRDAVRRGPQRHRARRGHHLRVAPAERAIRHRRRLHGVSRRRVRRERPPR
CCCHHHHHHHHHHHHHCCHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCH
RYRPRASRARDRRPRDARRRQGAPARARRAVPEGGGPHARERVRGREPRRAARRDSRHLW
HCCCCHHHHHCCCCHHHHHHCCCCHHHHHCCCCCCCHHHHHHHCCCCHHHHHHHHCCCCC
ADGLGPQRIPQLRVWLDAPRRGRRHPRRQAAAARRARAVDPRGHRARHRGPQGFGPRALR
CCCCCHHHCCCEEEEECCCHHCCCCHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCHHHHH
QRAGEHRDGRVPPPVARRRDPALARAAARAGDGRAAADQGRFAAHAGIGDERRQPAEGRA
HHCCCCCCCCCCCCHHHCCCHHHHHHHHHCCCCCCCCCCCCCCEECCCCHHHCCCCCCHH
REMPVDRARAAAVRRADARHRRRRETGDLPAARCVRARRRRGDRRVVGGARAAVSERPDR
HCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHCHHHHHHHCCCCC
RVQGRPRRRRPPGRRRHPGIPAPSRFMNKTMNTQTLSRLDAAPRRVNVAELASRFGIPIV
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHCCCCCCCHHHHHHHHCHHHH
FVALCVVLAFASPYFLTWRNWSDILRQTSINGILAIGMTYVILTKGIDLSVGSVLALAGI
HHHHHHHHHHCCCCEEEECCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
VSGLAGAAGHGLAVSLAAGVACGAALGAINGVAIARLNVPPFVATLGMLSVARGVTYIAN
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHCCEEEEC
DGSPVANLPDDYLSLGIGRLGPLGMPVLIFAGVALACWWVLRYTTYGRYLYAVGGNEKSA
CCCCCCCCCHHHHHHCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCC
RTSGIGVRKVVFSVYVVSGALAGLAGMILAARTTSALPQAGVSYELDAIAAVVIGGTSLS
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHCCCCCCC
GGQGGVVGTLFGALLIGVINNGLNLLGVSSYYQQIAKGLIIVLAVLIDVARKQQR
CCCCCHHHHHHHHHHHHHHHCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNEQKLSHSPGYDRDSCSARSKPGGEAIQRRERVARRTPEPCGRPRACAVRRQRHRKIHV
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCEECC
PEHPDGAFAPRRGHDPAERPRCRFRVARRSARKPHGDHHAGALAGAGDDGRREPVSWPRA
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
HPRGRRRRFPRAEAPRAGAARPARLRDRRGRADASAEPRADAARRDRESVQPRLPGDDHG
CCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC
RADFRDRRARDRDAVRRGPQRHRARRGHHLRVAPAERAIRHRRRLHGVSRRRVRRERPPR
CCCHHHHHHHHHHHHHCCHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCH
RYRPRASRARDRRPRDARRRQGAPARARRAVPEGGGPHARERVRGREPRRAARRDSRHLW
HCCCCHHHHHCCCCHHHHHHCCCCHHHHHCCCCCCCHHHHHHHCCCCHHHHHHHHCCCCC
ADGLGPQRIPQLRVWLDAPRRGRRHPRRQAAAARRARAVDPRGHRARHRGPQGFGPRALR
CCCCCHHHCCCEEEEECCCHHCCCCHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCHHHHH
QRAGEHRDGRVPPPVARRRDPALARAAARAGDGRAAADQGRFAAHAGIGDERRQPAEGRA
HHCCCCCCCCCCCCHHHCCCHHHHHHHHHCCCCCCCCCCCCCCEECCCCHHHCCCCCCHH
REMPVDRARAAAVRRADARHRRRRETGDLPAARCVRARRRRGDRRVVGGARAAVSERPDR
HCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHCHHHHHHHCCCCC
RVQGRPRRRRPPGRRRHPGIPAPSRFMNKTMNTQTLSRLDAAPRRVNVAELASRFGIPIV
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHCCCCCCCHHHHHHHHCHHHH
FVALCVVLAFASPYFLTWRNWSDILRQTSINGILAIGMTYVILTKGIDLSVGSVLALAGI
HHHHHHHHHHCCCCEEEECCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
VSGLAGAAGHGLAVSLAAGVACGAALGAINGVAIARLNVPPFVATLGMLSVARGVTYIAN
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHCCEEEEC
DGSPVANLPDDYLSLGIGRLGPLGMPVLIFAGVALACWWVLRYTTYGRYLYAVGGNEKSA
CCCCCCCCCHHHHHHCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCC
RTSGIGVRKVVFSVYVVSGALAGLAGMILAARTTSALPQAGVSYELDAIAAVVIGGTSLS
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHCCCCCCC
GGQGGVVGTLFGALLIGVINNGLNLLGVSSYYQQIAKGLIIVLAVLIDVARKQQR
CCCCCHHHHHHHHHHHHHHHCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]