Click here to switch to the map view.

The map label for this gene is nrfC [H]

Identifier: 76818979

GI number: 76818979

Start: 1759948

End: 1760745

Strand: Direct

Name: nrfC [H]

Synonym: BURPS1710b_A1446

Alternate gene names: 76818979

Gene position: 1759948-1760745 (Clockwise)

Preceding gene: 76819425

Following gene: 76819527

Centisome position: 55.31

GC content: 68.42

Gene sequence:

>798_bases
ATGACGCAAATGGCGCTCGTGATCGATCTGAACGTGTGCGTGGGGTGCCACGCGTGCGTGACGAGCTGCAAGGAATGGAA
CACGTCGGGCGACGCGGGCGCGCTGTCTGACTTGCGCCCATATGACGCCGATCCGTCCGGCACCTTCTTCAACCGCGTGC
AGACGTTCGAGGCGGGCGAATTTCCGCTCGCCGACACGATCCACTTCCCGAAGTCGTGCCTGCATTGCGAAGACCCGCCG
TGCGTGCCGGTCTGCCCGACGGGCGCGAGCTACAAGCGCGAGGAAGACGGGCTCGTGCTCGTCGATTACGACAAGTGCAT
CGGCTGCAAGTACTGCACGTGGGCGTGCCCATATGGCGCGCGCGAGCTCGACGAAGTGCGCAAGGAGATGACGAAGTGCA
CGCTTTGCGCGGACCGCATTCACGACGAGACGCTGCCCGAGCGCGATCGCAAGCCCGCGTGCGTGCTCGCGTGCCCGACG
TCGGCGCGCCTGTTCGGCGACATCCACGATCCGAATTCGACCGTGTCGCAGGCAATCCGCGAGCGCGGCGGCTATCAGTT
GATGCCGGAATGGGGAACGCGGCCCGCGAATCATTACCTGCCGCGCCGCACGACGACCGCGTGCGGGAGCGGGGGCGGCG
GTGGTAACGACGGGAGCGGAGGCGGCGGTTGCGGTAGCGGCGCCGCGTGCGCGTGCCGGCCGGCGGACGCGAAGCCCGCG
CCCGTCTCGGCCGGCGACGCGCTCGCGCACGGGCAGCCGAATCTCGCCGCGCTCGCGAAGCGCATCCGATCTGAATGA

Upstream 100 bases:

>100_bases
GGCGCGGTGCGGCGCATCGTGCAAACCTATTTCGCGGGGCGCGGCGAATTCGCCGCGCGGCTGCGCGATGCGGCGAAACG
CCGTTGACGAGGAGGACGCG

Downstream 100 bases:

>100_bases
GGGGCGCCGGCGCCCCCGACAACGCAGCAACCCAGCAACGAATCCGGAGCACTACGCATGAAACCCGCTTTCTCGGTCAT
CTTCCTGACGACGCTGAGCG

Product: iron-sulfur cluster-binding protein

Products: oxidized cytochrome C552; NH3 [C]

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 264

Protein sequence:

>265_residues
MTQMALVIDLNVCVGCHACVTSCKEWNTSGDAGALSDLRPYDADPSGTFFNRVQTFEAGEFPLADTIHFPKSCLHCEDPP
CVPVCPTGASYKREEDGLVLVDYDKCIGCKYCTWACPYGARELDEVRKEMTKCTLCADRIHDETLPERDRKPACVLACPT
SARLFGDIHDPNSTVSQAIRERGGYQLMPEWGTRPANHYLPRRTTTACGSGGGGGNDGSGGGGCGSGAACACRPADAKPA
PVSAGDALAHGQPNLAALAKRIRSE

Sequences:

>Translated_265_residues
MTQMALVIDLNVCVGCHACVTSCKEWNTSGDAGALSDLRPYDADPSGTFFNRVQTFEAGEFPLADTIHFPKSCLHCEDPP
CVPVCPTGASYKREEDGLVLVDYDKCIGCKYCTWACPYGARELDEVRKEMTKCTLCADRIHDETLPERDRKPACVLACPT
SARLFGDIHDPNSTVSQAIRERGGYQLMPEWGTRPANHYLPRRTTTACGSGGGGGNDGSGGGGCGSGAACACRPADAKPA
PVSAGDALAHGQPNLAALAKRIRSE
>Mature_264_residues
TQMALVIDLNVCVGCHACVTSCKEWNTSGDAGALSDLRPYDADPSGTFFNRVQTFEAGEFPLADTIHFPKSCLHCEDPPC
VPVCPTGASYKREEDGLVLVDYDKCIGCKYCTWACPYGARELDEVRKEMTKCTLCADRIHDETLPERDRKPACVLACPTS
ARLFGDIHDPNSTVSQAIRERGGYQLMPEWGTRPANHYLPRRTTTACGSGGGGGNDGSGGGGCGSGAACACRPADAKPAP
VSAGDALAHGQPNLAALAKRIRSE

Specific function: Probably involved in the transfer of electrons from the quinone pool to the type-c cytochromes [H]

COG id: COG0437

COG function: function code C; Fe-S-cluster-containing hydrogenase components 1

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI2367345, Length=200, Percent_Identity=38, Blast_Score=136, Evalue=1e-33,
Organism=Escherichia coli, GI1787122, Length=175, Percent_Identity=38.8571428571429, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1787872, Length=173, Percent_Identity=35.8381502890173, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI226510944, Length=211, Percent_Identity=31.7535545023697, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI1787749, Length=165, Percent_Identity=33.3333333333333, Blast_Score=100, Evalue=8e-23,
Organism=Escherichia coli, GI1790326, Length=181, Percent_Identity=30.939226519337, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1789370, Length=230, Percent_Identity=30, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1787740, Length=134, Percent_Identity=35.0746268656716, Blast_Score=81, Evalue=6e-17,
Organism=Escherichia coli, GI1787478, Length=101, Percent_Identity=37.6237623762376, Blast_Score=81, Evalue=6e-17,
Organism=Escherichia coli, GI2367245, Length=166, Percent_Identity=33.1325301204819, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1787963, Length=168, Percent_Identity=29.1666666666667, Blast_Score=74, Evalue=7e-15,
Organism=Escherichia coli, GI1789067, Length=178, Percent_Identity=31.4606741573034, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788811, Length=197, Percent_Identity=29.9492385786802, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI87082179, Length=161, Percent_Identity=29.8136645962733, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI87082180, Length=157, Percent_Identity=33.7579617834395, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1789079, Length=221, Percent_Identity=24.4343891402715, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR017567
- InterPro:   IPR006311 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28177; Mature: 28046

Theoretical pI: Translated: 5.89; Mature: 5.89

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

7.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
9.1 %Cys+Met (Translated Protein)
7.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
8.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQMALVIDLNVCVGCHACVTSCKEWNTSGDAGALSDLRPYDADPSGTFFNRVQTFEAGE
CCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCC
FPLADTIHFPKSCLHCEDPPCVPVCPTGASYKREEDGLVLVDYDKCIGCKYCTWACPYGA
CCCHHHHHCCHHHCCCCCCCCCEECCCCCCCCCCCCCEEEEECHHHCCCCCEEEECCCCH
RELDEVRKEMTKCTLCADRIHDETLPERDRKPACVLACPTSARLFGDIHDPNSTVSQAIR
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCEEECCCCCHHHHHHHHH
ERGGYQLMPEWGTRPANHYLPRRTTTACGSGGGGGNDGSGGGGCGSGAACACRPADAKPA
HCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC
PVSAGDALAHGQPNLAALAKRIRSE
CCCCCCHHHCCCCCHHHHHHHHHCC
>Mature Secondary Structure 
TQMALVIDLNVCVGCHACVTSCKEWNTSGDAGALSDLRPYDADPSGTFFNRVQTFEAGE
CCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCC
FPLADTIHFPKSCLHCEDPPCVPVCPTGASYKREEDGLVLVDYDKCIGCKYCTWACPYGA
CCCHHHHHCCHHHCCCCCCCCCEECCCCCCCCCCCCCEEEEECHHHCCCCCEEEECCCCH
RELDEVRKEMTKCTLCADRIHDETLPERDRKPACVLACPTSARLFGDIHDPNSTVSQAIR
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCEEECCCCCHHHHHHHHH
ERGGYQLMPEWGTRPANHYLPRRTTTACGSGGGGGNDGSGGGGCGSGAACACRPADAKPA
HCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC
PVSAGDALAHGQPNLAALAKRIRSE
CCCCCCHHHCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: reduced cytochrome C552; nitrite [C]

Specific reaction: reduced cytochrome C552 + nitrite = oxidized cytochrome C552 + NH3 [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]