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The map label for this gene is yccM [C]

Identifier: 76818283

GI number: 76818283

Start: 2339721

End: 2341121

Strand: Direct

Name: yccM [C]

Synonym: BURPS1710b_A1924

Alternate gene names: 76818283

Gene position: 2339721-2341121 (Clockwise)

Preceding gene: 76818952

Following gene: 76819483

Centisome position: 73.54

GC content: 68.45

Gene sequence:

>1401_bases
ATGAGCGCCGTCGTCGGCTGTCGCCGCACGAGCCTCGTCGCGCAAGCCGGGCACTGGATGCAGCGCCACGGCGCGCTGAT
CCGCGGCATCCAGTGGGTGGTCGTGCTCGTCTATGCGTTCCTGATTCTCGTGCCGGCGTTCACGCCGCTGCCCGACGACA
CCGCGCATCTGTGGAGCAACCTGACGCTCGCCGCGCAGTTCGTTTTCTGGGGCATCTGGTGGCCGTTCGTGCTGCTGTCG
ATGGTGATGCTCGGCCGCGTCTGGTGCGGGGTGCTGTGCCCCGAGGGCGCATTGAGCGAGTTCGCGAGCAAGTTCGGCCG
CGGCCGCGCGATTCCGCGCTGGATGCGCTGGGGCGGCTGGCCGTTCGTCGCATTCGGCCTGACGACGATCTACGGGCAGA
TGGTGAGCGTCTATCAGTACCCGCGCGCCGTGTTGCTCGTGCTCGGCGGCTCGACGCTCGCCGCGATCGTGATCGGCTTT
CTGTATGGGCGCGAAAAGCGCGTGTGGTGCCGCTATCTGTGCCCGGTGAACGGCGTCTTTTCGCTGCTCGCGCGCCTTTC
GCCGCTGCGCTACAAGGTCGACGAGGATGCGTGGCGCCGCTCGTACAGGAAAGGCGAGGACGGCCATCGCGTGATTCCGA
TCAACTGCGCGCCGCTCGTGCCGCTGCGCAACATGAAGGGCGCGGCGGCGTGCCACATGTGCGGCCGATGCAGCGGGCAC
CGCGGCGCGATCGAACTGACGGCGCGCTCGCCGTCCGAGGAAGTGGTCGCGCTCGGCGACAGGCAGGCGAGCAGCTGGGA
CACGGCGCTCATCCTGTACGGCCTGCTCGGCATCGCGATCGGCGCGTTCCACTGGACGGTGAGCCCATGGTTCGTGCAGA
TCAAGCAGACGCTCGCGGGCTGGCTGATCGATCACGACATCATGTGGCCGCTCGATACGAACGCGCCCTGGTTCATCTTC
ACGCACTATCCCGAGCACAATGATGTGTTCTCGTGGCTCGACGGCTCGCTCGTCGTCGCGTACATCGTCGGTACGGGCCT
CGTGTACGGCACGGCGCTCGCCGTGCTGCTCGCCGGCGCCGCCGCGATGCTCGGCCGGTTCGAGCGCGTGCGGCTCCATC
ACCTTGCACAGGCGCTGATTCCGCTCGCGGGCGCGGGCGTGTTCCTCGGTTTGTCGGCGACGACGCTGTCGCTGCTGCGC
GCCGAGCACGTGCCGCTCGGCTGGGCGTCGGACGTTCGCATCGCGATCCTCGTCGGTGCGAATCTGTGGAGCGCGTGGCT
CGCGTGGCTGGTCACCGGCCGCTATGCGAGCTGGCCGCGGCGGCTGCTCGCGATGCTCTGGTTCGGCGCCGCGCTCGCGG
TGGTCGACAGCGCGTGGTGGCTGATGTTCTGGGGTTTCTGA

Upstream 100 bases:

>100_bases
CGTTGACCAATCTCGTCGCCTACGTGGCCTACTGGGCGATCGTCTATCTGCTGCTCAAGCGCGCCGCGCGCCGCCCGGCG
GCGACTGCGGGGCGGCCGGC

Downstream 100 bases:

>100_bases
CGCGCTTCGGGCGGTATGATGCATCCGTCGATGGGCATGCATCGCGAAGGAGTGTCCAGATGAGAACCAAACCCGTTCTG
ACGAGCGACGACGTGAACAA

Product: nitrogen fixation protein VnfA

Products: NA

Alternate protein names: Regulatory Protein; Polyferredoxin; Nitrogen Assimilation Regulatory Protein; Polyferredoxin-Like Protein; Polyferredoxin-Like; Nitrogen Regulatory Protein; Ferredoxin; Polyferredoxin Protein; Sigma-54 Interaction Domain Family

Number of amino acids: Translated: 466; Mature: 465

Protein sequence:

>466_residues
MSAVVGCRRTSLVAQAGHWMQRHGALIRGIQWVVVLVYAFLILVPAFTPLPDDTAHLWSNLTLAAQFVFWGIWWPFVLLS
MVMLGRVWCGVLCPEGALSEFASKFGRGRAIPRWMRWGGWPFVAFGLTTIYGQMVSVYQYPRAVLLVLGGSTLAAIVIGF
LYGREKRVWCRYLCPVNGVFSLLARLSPLRYKVDEDAWRRSYRKGEDGHRVIPINCAPLVPLRNMKGAAACHMCGRCSGH
RGAIELTARSPSEEVVALGDRQASSWDTALILYGLLGIAIGAFHWTVSPWFVQIKQTLAGWLIDHDIMWPLDTNAPWFIF
THYPEHNDVFSWLDGSLVVAYIVGTGLVYGTALAVLLAGAAAMLGRFERVRLHHLAQALIPLAGAGVFLGLSATTLSLLR
AEHVPLGWASDVRIAILVGANLWSAWLAWLVTGRYASWPRRLLAMLWFGAALAVVDSAWWLMFWGF

Sequences:

>Translated_466_residues
MSAVVGCRRTSLVAQAGHWMQRHGALIRGIQWVVVLVYAFLILVPAFTPLPDDTAHLWSNLTLAAQFVFWGIWWPFVLLS
MVMLGRVWCGVLCPEGALSEFASKFGRGRAIPRWMRWGGWPFVAFGLTTIYGQMVSVYQYPRAVLLVLGGSTLAAIVIGF
LYGREKRVWCRYLCPVNGVFSLLARLSPLRYKVDEDAWRRSYRKGEDGHRVIPINCAPLVPLRNMKGAAACHMCGRCSGH
RGAIELTARSPSEEVVALGDRQASSWDTALILYGLLGIAIGAFHWTVSPWFVQIKQTLAGWLIDHDIMWPLDTNAPWFIF
THYPEHNDVFSWLDGSLVVAYIVGTGLVYGTALAVLLAGAAAMLGRFERVRLHHLAQALIPLAGAGVFLGLSATTLSLLR
AEHVPLGWASDVRIAILVGANLWSAWLAWLVTGRYASWPRRLLAMLWFGAALAVVDSAWWLMFWGF
>Mature_465_residues
SAVVGCRRTSLVAQAGHWMQRHGALIRGIQWVVVLVYAFLILVPAFTPLPDDTAHLWSNLTLAAQFVFWGIWWPFVLLSM
VMLGRVWCGVLCPEGALSEFASKFGRGRAIPRWMRWGGWPFVAFGLTTIYGQMVSVYQYPRAVLLVLGGSTLAAIVIGFL
YGREKRVWCRYLCPVNGVFSLLARLSPLRYKVDEDAWRRSYRKGEDGHRVIPINCAPLVPLRNMKGAAACHMCGRCSGHR
GAIELTARSPSEEVVALGDRQASSWDTALILYGLLGIAIGAFHWTVSPWFVQIKQTLAGWLIDHDIMWPLDTNAPWFIFT
HYPEHNDVFSWLDGSLVVAYIVGTGLVYGTALAVLLAGAAAMLGRFERVRLHHLAQALIPLAGAGVFLGLSATTLSLLRA
EHVPLGWASDVRIAILVGANLWSAWLAWLVTGRYASWPRRLLAMLWFGAALAVVDSAWWLMFWGF

Specific function: Unknown

COG id: COG0348

COG function: function code C; Polyferredoxin

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 51832; Mature: 51701

Theoretical pI: Translated: 9.63; Mature: 9.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAVVGCRRTSLVAQAGHWMQRHGALIRGIQWVVVLVYAFLILVPAFTPLPDDTAHLWSN
CCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
LTLAAQFVFWGIWWPFVLLSMVMLGRVWCGVLCPEGALSEFASKFGRGRAIPRWMRWGGW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHCCCC
PFVAFGLTTIYGQMVSVYQYPRAVLLVLGGSTLAAIVIGFLYGREKRVWCRYLCPVNGVF
HHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCHHHEECCHHHHH
SLLARLSPLRYKVDEDAWRRSYRKGEDGHRVIPINCAPLVPLRNMKGAAACHMCGRCSGH
HHHHHCCCCCEECCHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHCCCCC
RGAIELTARSPSEEVVALGDRQASSWDTALILYGLLGIAIGAFHWTVSPWFVQIKQTLAG
CCEEEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
WLIDHDIMWPLDTNAPWFIFTHYPEHNDVFSWLDGSLVVAYIVGTGLVYGTALAVLLAGA
HHHCCCEECEECCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
AAMLGRFERVRLHHLAQALIPLAGAGVFLGLSATTLSLLRAEHVPLGWASDVRIAILVGA
HHHHHHHHHHHHHHHHHHHHHHHCCHHHEEHHHHHHHHHHHHCCCCCCCCCCEEEEEECC
NLWSAWLAWLVTGRYASWPRRLLAMLWFGAALAVVDSAWWLMFWGF
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECC
>Mature Secondary Structure 
SAVVGCRRTSLVAQAGHWMQRHGALIRGIQWVVVLVYAFLILVPAFTPLPDDTAHLWSN
CCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
LTLAAQFVFWGIWWPFVLLSMVMLGRVWCGVLCPEGALSEFASKFGRGRAIPRWMRWGGW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHCCCC
PFVAFGLTTIYGQMVSVYQYPRAVLLVLGGSTLAAIVIGFLYGREKRVWCRYLCPVNGVF
HHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCHHHEECCHHHHH
SLLARLSPLRYKVDEDAWRRSYRKGEDGHRVIPINCAPLVPLRNMKGAAACHMCGRCSGH
HHHHHCCCCCEECCHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHCCCCC
RGAIELTARSPSEEVVALGDRQASSWDTALILYGLLGIAIGAFHWTVSPWFVQIKQTLAG
CCEEEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
WLIDHDIMWPLDTNAPWFIFTHYPEHNDVFSWLDGSLVVAYIVGTGLVYGTALAVLLAGA
HHHCCCEECEECCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
AAMLGRFERVRLHHLAQALIPLAGAGVFLGLSATTLSLLRAEHVPLGWASDVRIAILVGA
HHHHHHHHHHHHHHHHHHHHHHHCCHHHEEHHHHHHHHHHHHCCCCCCCCCCEEEEEECC
NLWSAWLAWLVTGRYASWPRRLLAMLWFGAALAVVDSAWWLMFWGF
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA