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The map label for this gene is cph2 [H]

Identifier: 76818246

GI number: 76818246

Start: 1344514

End: 1346100

Strand: Direct

Name: cph2 [H]

Synonym: BURPS1710b_A1077

Alternate gene names: 76818246

Gene position: 1344514-1346100 (Clockwise)

Preceding gene: 76817544

Following gene: 76817679

Centisome position: 42.26

GC content: 68.37

Gene sequence:

>1587_bases
GTGAAGCGGCGTCCGCACCCAGCGGCGGCCTCGATCCGGCCGCCCGACAGGCTTTCCGACGTCATGCGCAAGCGTACGAC
CTCCTTTGCGACTCGTTTCCTGCAGCCCTGGACGCAGAGCCTGATGTCGCCGACGGGCGTAATCGTTTGCGGCATGCTGC
TGCTCACGCTGATCTGGCTGTTTTGCGCACGCGTGCTGTACCAGTCGCACCGGGACGCATACCTGCATGCGGTCGACAAC
GCACACAATCTCGTGCTGCTGCTCGAACGCGACATCGCGCGCAACGTCGAGCTCTACGACCTGTCGCTGCAGGCGGTCGT
CGACGGCGTGAACGATCCGCGCATCATGGCGCTCGATCCCGCGATACGCGCCAAGGTGCTGTTCGACCGCGCGGCCACCG
GCAAGTACCTCGGCACGATCTCCGTGATGAACGAGCACGGCGACATCGTGCTCGACTCGCACTTCCCGCATCCGCCTGCC
GTCGCGAACTTCTCGTATCGCGACTATTTCGTCTACCAGCGCGATCACCCGAAAGGCGGCCTCTACATCGGCGAGCCGTA
CGCGGCGCGGCTGCGCCACGGCGCGCCGACGATCGCGCTCAGCCGGCGCATCACGCGCGCCGACGGCTCGTTCGGCGGCG
TCGTCGTCGGCACGCTCGGCATCGACTACTTCCGCTCGCTGCTCGACGGTCTTTCGGTGGGCCCGGACGGCACGGCGGCC
GTCTTCGAGACCAACGGGCTGATGATCACGCGCCTGCCGTTCGATCCGAAGATGGTCGGACGCAGCATCGCCGACTCGGC
CCTCTACGCGCACGTGCGCGAGCACGACGCGGGCGTGTTCACCGGCGTCGCGTCGATCGATGGCGTGCGGCGGCTTTACG
TGTACAAGCGGCTGCAGGGGCTGCCGATCGTCGTCAACGTGTCGCCCGCCGAGCGGCACGTCTTCATGCAATGGCGCATT
CGGGCGCAGCGGCTCGGCGTGCTGATGCTCGTGTTCGGCATCGCGATCGTCGGCGGCACCGCGCTGCTCGCGCGCGAGTT
GCGCTGGCGGCGGCACGCGGAAATGCGCCTGCAGCGCCTCGCCCGCACCGATGCGCTGACGGGCCTCGGCAATCGGCGCG
CGTTCGACGAGAACCTGCGCAGCGAATGGGCGCGCGCGCTGCGCACCGGCCGCCCGCTGTCGCTGCTGTTCGTCGACATC
GATCAGTTCAAGGACTACAACGACCACTACGGCCACCAGGCGGGCGACGACGTGCTGCGCGAAGTCGGCGGCTGCCTCGC
GGTGAACGTACGCCGCGCGGCCGACGACGTCGCGCGTTACGGCGGCGAGGAGTTCGTGATCACGCTGCCGGACACCGACG
CGAAAAGCGCGGCCGCGATCGCCGAGTACATCCGTCGCGCGGTCTACGATCTCGACATCGAGCACGTGCGCAGCCCGTAT
GCGCGCGTGACCGTCAGCATCGGCCTCGTCACGTCGCACGAGCACATCGCGCACTCGGACGCGACGCTCGTGAAGATGGC
CGATGCCGCGCTGTACCAGGCGAAATCGACCGGACGCAACCGCGTCTGCGGCGCGCAGCACGCCTGA

Upstream 100 bases:

>100_bases
CGAATGCTCAAGAAAATGCGGCGTTGCACGATAACCCGAATAGCCGCCGCGCTCGCCCGAGCCCACCCTCGCGCGCAGCG
GCGGATGAAACGACGGCCCG

Downstream 100 bases:

>100_bases
GCCGGCGCGCGCCGCGGCAGCCGCGCCCGGTGCGCGAGCCCGGTGGCCCGCGCCGGAAACCATGCCGGCAACCGCACCCG
AAAGGAACCAGGGCCGCGCG

Product: GGDEF domain-containing protein

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 528; Mature: 528

Protein sequence:

>528_residues
MKRRPHPAAASIRPPDRLSDVMRKRTTSFATRFLQPWTQSLMSPTGVIVCGMLLLTLIWLFCARVLYQSHRDAYLHAVDN
AHNLVLLLERDIARNVELYDLSLQAVVDGVNDPRIMALDPAIRAKVLFDRAATGKYLGTISVMNEHGDIVLDSHFPHPPA
VANFSYRDYFVYQRDHPKGGLYIGEPYAARLRHGAPTIALSRRITRADGSFGGVVVGTLGIDYFRSLLDGLSVGPDGTAA
VFETNGLMITRLPFDPKMVGRSIADSALYAHVREHDAGVFTGVASIDGVRRLYVYKRLQGLPIVVNVSPAERHVFMQWRI
RAQRLGVLMLVFGIAIVGGTALLARELRWRRHAEMRLQRLARTDALTGLGNRRAFDENLRSEWARALRTGRPLSLLFVDI
DQFKDYNDHYGHQAGDDVLREVGGCLAVNVRRAADDVARYGGEEFVITLPDTDAKSAAAIAEYIRRAVYDLDIEHVRSPY
ARVTVSIGLVTSHEHIAHSDATLVKMADAALYQAKSTGRNRVCGAQHA

Sequences:

>Translated_528_residues
MKRRPHPAAASIRPPDRLSDVMRKRTTSFATRFLQPWTQSLMSPTGVIVCGMLLLTLIWLFCARVLYQSHRDAYLHAVDN
AHNLVLLLERDIARNVELYDLSLQAVVDGVNDPRIMALDPAIRAKVLFDRAATGKYLGTISVMNEHGDIVLDSHFPHPPA
VANFSYRDYFVYQRDHPKGGLYIGEPYAARLRHGAPTIALSRRITRADGSFGGVVVGTLGIDYFRSLLDGLSVGPDGTAA
VFETNGLMITRLPFDPKMVGRSIADSALYAHVREHDAGVFTGVASIDGVRRLYVYKRLQGLPIVVNVSPAERHVFMQWRI
RAQRLGVLMLVFGIAIVGGTALLARELRWRRHAEMRLQRLARTDALTGLGNRRAFDENLRSEWARALRTGRPLSLLFVDI
DQFKDYNDHYGHQAGDDVLREVGGCLAVNVRRAADDVARYGGEEFVITLPDTDAKSAAAIAEYIRRAVYDLDIEHVRSPY
ARVTVSIGLVTSHEHIAHSDATLVKMADAALYQAKSTGRNRVCGAQHA
>Mature_528_residues
MKRRPHPAAASIRPPDRLSDVMRKRTTSFATRFLQPWTQSLMSPTGVIVCGMLLLTLIWLFCARVLYQSHRDAYLHAVDN
AHNLVLLLERDIARNVELYDLSLQAVVDGVNDPRIMALDPAIRAKVLFDRAATGKYLGTISVMNEHGDIVLDSHFPHPPA
VANFSYRDYFVYQRDHPKGGLYIGEPYAARLRHGAPTIALSRRITRADGSFGGVVVGTLGIDYFRSLLDGLSVGPDGTAA
VFETNGLMITRLPFDPKMVGRSIADSALYAHVREHDAGVFTGVASIDGVRRLYVYKRLQGLPIVVNVSPAERHVFMQWRI
RAQRLGVLMLVFGIAIVGGTALLARELRWRRHAEMRLQRLARTDALTGLGNRRAFDENLRSEWARALRTGRPLSLLFVDI
DQFKDYNDHYGHQAGDDVLREVGGCLAVNVRRAADDVARYGGEEFVITLPDTDAKSAAAIAEYIRRAVYDLDIEHVRSPY
ARVTVSIGLVTSHEHIAHSDATLVKMADAALYQAKSTGRNRVCGAQHA

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI145693134, Length=159, Percent_Identity=40.8805031446541, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI87081881, Length=194, Percent_Identity=39.6907216494845, Blast_Score=110, Evalue=3e-25,
Organism=Escherichia coli, GI1786584, Length=228, Percent_Identity=30.7017543859649, Blast_Score=105, Evalue=9e-24,
Organism=Escherichia coli, GI1787262, Length=168, Percent_Identity=39.8809523809524, Blast_Score=105, Evalue=1e-23,
Organism=Escherichia coli, GI87082007, Length=172, Percent_Identity=38.3720930232558, Blast_Score=104, Evalue=1e-23,
Organism=Escherichia coli, GI1788381, Length=185, Percent_Identity=36.7567567567568, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1787541, Length=181, Percent_Identity=33.7016574585635, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1787802, Length=164, Percent_Identity=34.1463414634146, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI1787816, Length=164, Percent_Identity=36.5853658536585, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI87081977, Length=203, Percent_Identity=32.512315270936, Blast_Score=79, Evalue=6e-16,
Organism=Escherichia coli, GI1788085, Length=189, Percent_Identity=31.2169312169312, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI87081974, Length=159, Percent_Identity=28.9308176100629, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1788956, Length=181, Percent_Identity=32.0441988950276, Blast_Score=70, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 58723; Mature: 58723

Theoretical pI: Translated: 9.68; Mature: 9.68

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRRPHPAAASIRPPDRLSDVMRKRTTSFATRFLQPWTQSLMSPTGVIVCGMLLLTLIWL
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
FCARVLYQSHRDAYLHAVDNAHNLVLLLERDIARNVELYDLSLQAVVDGVNDPRIMALDP
HHHHHHHHCCCCCEEEEECCCCCEEEEEECHHHCCCEEEEEEHHHHHCCCCCCEEEEECH
AIRAKVLFDRAATGKYLGTISVMNEHGDIVLDSHFPHPPAVANFSYRDYFVYQRDHPKGG
HHHHHHHHHHCCCCCEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEECCCCCC
LYIGEPYAARLRHGAPTIALSRRITRADGSFGGVVVGTLGIDYFRSLLDGLSVGPDGTAA
EEECCCHHHHHHCCCCCCHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHCCCCCCCCCEE
VFETNGLMITRLPFDPKMVGRSIADSALYAHVREHDAGVFTGVASIDGVRRLYVYKRLQG
EEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHCC
LPIVVNVSPAERHVFMQWRIRAQRLGVLMLVFGIAIVGGTALLARELRWRRHAEMRLQRL
CEEEEECCCCHHEEEHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ARTDALTGLGNRRAFDENLRSEWARALRTGRPLSLLFVDIDQFKDYNDHYGHQAGDDVLR
HHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHCCCCHHCCCCCHHHHHH
EVGGCLAVNVRRAADDVARYGGEEFVITLPDTDAKSAAAIAEYIRRAVYDLDIEHVRSPY
HHCCEEEEEHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCHHHHCCCC
ARVTVSIGLVTSHEHIAHSDATLVKMADAALYQAKSTGRNRVCGAQHA
EEEEEEEEEEECCCHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MKRRPHPAAASIRPPDRLSDVMRKRTTSFATRFLQPWTQSLMSPTGVIVCGMLLLTLIWL
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
FCARVLYQSHRDAYLHAVDNAHNLVLLLERDIARNVELYDLSLQAVVDGVNDPRIMALDP
HHHHHHHHCCCCCEEEEECCCCCEEEEEECHHHCCCEEEEEEHHHHHCCCCCCEEEEECH
AIRAKVLFDRAATGKYLGTISVMNEHGDIVLDSHFPHPPAVANFSYRDYFVYQRDHPKGG
HHHHHHHHHHCCCCCEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEEEECCCCCC
LYIGEPYAARLRHGAPTIALSRRITRADGSFGGVVVGTLGIDYFRSLLDGLSVGPDGTAA
EEECCCHHHHHHCCCCCCHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHCCCCCCCCCEE
VFETNGLMITRLPFDPKMVGRSIADSALYAHVREHDAGVFTGVASIDGVRRLYVYKRLQG
EEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHCC
LPIVVNVSPAERHVFMQWRIRAQRLGVLMLVFGIAIVGGTALLARELRWRRHAEMRLQRL
CEEEEECCCCHHEEEHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ARTDALTGLGNRRAFDENLRSEWARALRTGRPLSLLFVDIDQFKDYNDHYGHQAGDDVLR
HHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHCCCCHHCCCCCHHHHHH
EVGGCLAVNVRRAADDVARYGGEEFVITLPDTDAKSAAAIAEYIRRAVYDLDIEHVRSPY
HHCCEEEEEHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCHHHHCCCC
ARVTVSIGLVTSHEHIAHSDATLVKMADAALYQAKSTGRNRVCGAQHA
EEEEEEEEEEECCCHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]