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The map label for this gene is rpoE [C]

Identifier: 76818237

GI number: 76818237

Start: 1830868

End: 1831473

Strand: Direct

Name: rpoE [C]

Synonym: BURPS1710b_A1499

Alternate gene names: 76818237

Gene position: 1830868-1831473 (Clockwise)

Preceding gene: 76817340

Following gene: 76817693

Centisome position: 57.54

GC content: 63.53

Gene sequence:

>606_bases
ATGCAGCACGCGCGCGCCGCGCACGACGATCCCGCCTATCTCGCGCAATTGCGCCACGATTTACTTCGCTTCGCGCGTCT
GCAACTGCGCGACGCCGATGCGGCCGAAGACGCCGTCCAGGAGGCGCTCGCGGCGGCATGGGCGCAGGCCGAGCGCTTCG
ACGGGCAGTCGAGCCACAAGACCTGGGTGTTCGGCATCCTGCGCAACAAGCTGATCGATACGATCCGGGCGCGGCGCAGG
ACGATCAACGCGTCGGCGCTCGACGCGGAGCTCGACGGCGAAGCGCTTCTCGAGCGCGAACTGTTCGTGGACAATGGGCA
CTGGGCGCCGCACGCGAAGCCTCGTCCGTGGCCGAAGCCGGAAACGATCCTGCAGCAGCGGCAGTTCTGGATACTGTTCG
AGACGTGTCTCGAACACCTGCCGGAGCAGATTGGCCGCGTATTCATGATGCGCGAGTTTCTCGATTTCGCAATCGACGAC
ATTTGCACGGAGCTCGAACTGAAGGCGAACCATTGCAGCGTGCTGCTGTACCGCGCACGGACCCGACTGCGCACCTGTCT
CACCGAAAAAGGCTTGACGACCGAAGATGCTACTGGGGAAATGTAA

Upstream 100 bases:

>100_bases
CGCTTGCCGCCGCGCTTGCCACGGCGCGCGTCGCATGGATAATCTTGCGCTGCCGCCCGCGCGCGCCGTATGCGCGCAGG
CAAGAACCGGAAGCCATCCC

Downstream 100 bases:

>100_bases
GGACATCACGCGGCTCCTGTCGGACGAACTCGACCGTCCGCTGTCGCTCGACGAGCGGCTCCGCGTGCGCGTGCATCTGC
CGGCTTGCACCGGTTGCCGC

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 201; Mature: 201

Protein sequence:

>201_residues
MQHARAAHDDPAYLAQLRHDLLRFARLQLRDADAAEDAVQEALAAAWAQAERFDGQSSHKTWVFGILRNKLIDTIRARRR
TINASALDAELDGEALLERELFVDNGHWAPHAKPRPWPKPETILQQRQFWILFETCLEHLPEQIGRVFMMREFLDFAIDD
ICTELELKANHCSVLLYRARTRLRTCLTEKGLTTEDATGEM

Sequences:

>Translated_201_residues
MQHARAAHDDPAYLAQLRHDLLRFARLQLRDADAAEDAVQEALAAAWAQAERFDGQSSHKTWVFGILRNKLIDTIRARRR
TINASALDAELDGEALLERELFVDNGHWAPHAKPRPWPKPETILQQRQFWILFETCLEHLPEQIGRVFMMREFLDFAIDD
ICTELELKANHCSVLLYRARTRLRTCLTEKGLTTEDATGEM
>Mature_201_residues
MQHARAAHDDPAYLAQLRHDLLRFARLQLRDADAAEDAVQEALAAAWAQAERFDGQSSHKTWVFGILRNKLIDTIRARRR
TINASALDAELDGEALLERELFVDNGHWAPHAKPRPWPKPETILQQRQFWILFETCLEHLPEQIGRVFMMREFLDFAIDD
ICTELELKANHCSVLLYRARTRLRTCLTEKGLTTEDATGEM

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Is Involved In Heat Shock And Oxidative Stress Response; It Is Believed To Control Protein Processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014289
- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 23203; Mature: 23203

Theoretical pI: Translated: 6.09; Mature: 6.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQHARAAHDDPAYLAQLRHDLLRFARLQLRDADAAEDAVQEALAAAWAQAERFDGQSSHK
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
TWVFGILRNKLIDTIRARRRTINASALDAELDGEALLERELFVDNGHWAPHAKPRPWPKP
HHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCH
ETILQQRQFWILFETCLEHLPEQIGRVFMMREFLDFAIDDICTELELKANHCSVLLYRAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
TRLRTCLTEKGLTTEDATGEM
HHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MQHARAAHDDPAYLAQLRHDLLRFARLQLRDADAAEDAVQEALAAAWAQAERFDGQSSHK
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
TWVFGILRNKLIDTIRARRRTINASALDAELDGEALLERELFVDNGHWAPHAKPRPWPKP
HHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCH
ETILQQRQFWILFETCLEHLPEQIGRVFMMREFLDFAIDDICTELELKANHCSVLLYRAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
TRLRTCLTEKGLTTEDATGEM
HHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]