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The map label for this gene is kdgR [H]

Identifier: 76817726

GI number: 76817726

Start: 1543516

End: 1544340

Strand: Direct

Name: kdgR [H]

Synonym: BURPS1710b_A1233

Alternate gene names: 76817726

Gene position: 1543516-1544340 (Clockwise)

Preceding gene: 76817331

Following gene: 76818487

Centisome position: 48.51

GC content: 69.58

Gene sequence:

>825_bases
ATGAAACCCAGGAAAGACGCGCCCGCCGGCGCCGCGCAAGCGCCGCACGATTGTGAGGAAATCGAGCGCTATCGCGCGCC
CGCGCTCGACAAGGGGCTCGATATCCTCGAGCTTCTCGCCGAGCAGAAGGAAGGCCTCACGCGCACCGAGATCACGAAGG
AGCTCGGCCGCAACGCGAGCGAGATCTACCGGATGCTGGAGCGGCTCGTCGCGCGCCAATACGTGATCCGCTCGCCGGGA
GGCGACCGCTACACGCTGAGCCTGAAGCTCTACTCGCTCGCCCACCGCCACCCGCCGCTCAAGCGGCTGATCGGCGAAGC
GCTGCCGCCGATGCAGCGCTTCGCCGATGCGGCCGAGCAGTCGTGCCACCTGTGCGTGTACGACCGCGGCAACCTGCTCG
TGATCGCGCAGGTCGACGGGCCGGGCGCATGGGGCATCTCGGTGCGGCTCGGCTCGCGCGTCGGGCTCGTCGACACCGCG
TCGGGCCCCGTGTTGCTTGCGTTCCAGACGCCCGAGCAGCGCGCCCGGATGCTCGTCGAGCATACGAAGGTGGAAGGCGA
AATCGCGCTCGACATGCGCGAGTTCGACGCGCTGCTGCACGAGATCCGCGCGACCGGCCGGCTCCGGCAGAAGAGCCGCC
AGGCATTCGGCGTGACCGACATCGCGTATCCGGTTCTCGGGCCGTCGGGCCATGCGATCGCCGCGCTCACGTGCCCGTAC
GTCCGCCGGATCGACACGCACGCCGCGCCGTGCGCCGAGGATGTCGACGCGCAACTGCGCGCGACGGCCCGACATCTTTC
GATGCTGAAAGAGGCGGCCGCGTGA

Upstream 100 bases:

>100_bases
GACCTATGAATCAACCATCCATCGACGCAATCGGCGCAGCCGCGCAGCACGCGCGGCCGGGGCGTTCGATGCATCGCGTC
CCCGGACAACCGATCCACCG

Downstream 100 bases:

>100_bases
CGTTCGCGATCCGCCCGACGAAAATGTGAAATCATTCCGGCCTGTCCATGCGGATAACGGGCTGGCGAGCGCGCCGTGGC
GCCCGCCGCGCGGGCCGGGG

Product: IclR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 274; Mature: 274

Protein sequence:

>274_residues
MKPRKDAPAGAAQAPHDCEEIERYRAPALDKGLDILELLAEQKEGLTRTEITKELGRNASEIYRMLERLVARQYVIRSPG
GDRYTLSLKLYSLAHRHPPLKRLIGEALPPMQRFADAAEQSCHLCVYDRGNLLVIAQVDGPGAWGISVRLGSRVGLVDTA
SGPVLLAFQTPEQRARMLVEHTKVEGEIALDMREFDALLHEIRATGRLRQKSRQAFGVTDIAYPVLGPSGHAIAALTCPY
VRRIDTHAAPCAEDVDAQLRATARHLSMLKEAAA

Sequences:

>Translated_274_residues
MKPRKDAPAGAAQAPHDCEEIERYRAPALDKGLDILELLAEQKEGLTRTEITKELGRNASEIYRMLERLVARQYVIRSPG
GDRYTLSLKLYSLAHRHPPLKRLIGEALPPMQRFADAAEQSCHLCVYDRGNLLVIAQVDGPGAWGISVRLGSRVGLVDTA
SGPVLLAFQTPEQRARMLVEHTKVEGEIALDMREFDALLHEIRATGRLRQKSRQAFGVTDIAYPVLGPSGHAIAALTCPY
VRRIDTHAAPCAEDVDAQLRATARHLSMLKEAAA
>Mature_274_residues
MKPRKDAPAGAAQAPHDCEEIERYRAPALDKGLDILELLAEQKEGLTRTEITKELGRNASEIYRMLERLVARQYVIRSPG
GDRYTLSLKLYSLAHRHPPLKRLIGEALPPMQRFADAAEQSCHLCVYDRGNLLVIAQVDGPGAWGISVRLGSRVGLVDTA
SGPVLLAFQTPEQRARMLVEHTKVEGEIALDMREFDALLHEIRATGRLRQKSRQAFGVTDIAYPVLGPSGHAIAALTCPY
VRRIDTHAAPCAEDVDAQLRATARHLSMLKEAAA

Specific function: Transcriptional repressor of genes involved in pectinolysis and in pectinase secretion. Controls all the genes involved in pectin catabolism, including the pel genes encoding pectate lyases, kdgT which encodes the 2-keto-3-deoxygluconate transport system

COG id: COG1414

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 iclR-ED (iclR effector binding) domain [H]

Homologues:

Organism=Escherichia coli, GI1788131, Length=212, Percent_Identity=26.8867924528302, Blast_Score=73, Evalue=2e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014757
- InterPro:   IPR005471
- InterPro:   IPR011991 [H]

Pfam domain/function: PF09339 HTH_IclR; PF01614 IclR [H]

EC number: NA

Molecular weight: Translated: 30212; Mature: 30212

Theoretical pI: Translated: 8.23; Mature: 8.23

Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPRKDAPAGAAQAPHDCEEIERYRAPALDKGLDILELLAEQKEGLTRTEITKELGRNAS
CCCCCCCCCCCCCCCCCHHHHHHHCCCCHHCCHHHHHHHHHHHCCCHHHHHHHHHCCCHH
EIYRMLERLVARQYVIRSPGGDRYTLSLKLYSLAHRHPPLKRLIGEALPPMQRFADAAEQ
HHHHHHHHHHHHHHHHCCCCCCEEEEEEEEHHHHHCCCHHHHHHHHCCCHHHHHHHHHHC
SCHLCVYDRGNLLVIAQVDGPGAWGISVRLGSRVGLVDTASGPVLLAFQTPEQRARMLVE
CCEEEEEECCCEEEEEEECCCCCEEEEEEECCEECEEECCCCCEEEEECCHHHHHHHHHH
HTKVEGEIALDMREFDALLHEIRATGRLRQKSRQAFGVTDIAYPVLGPSGHAIAALTCPY
HHHCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCHH
VRRIDTHAAPCAEDVDAQLRATARHLSMLKEAAA
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKPRKDAPAGAAQAPHDCEEIERYRAPALDKGLDILELLAEQKEGLTRTEITKELGRNAS
CCCCCCCCCCCCCCCCCHHHHHHHCCCCHHCCHHHHHHHHHHHCCCHHHHHHHHHCCCHH
EIYRMLERLVARQYVIRSPGGDRYTLSLKLYSLAHRHPPLKRLIGEALPPMQRFADAAEQ
HHHHHHHHHHHHHHHHCCCCCCEEEEEEEEHHHHHCCCHHHHHHHHCCCHHHHHHHHHHC
SCHLCVYDRGNLLVIAQVDGPGAWGISVRLGSRVGLVDTASGPVLLAFQTPEQRARMLVE
CCEEEEEECCCEEEEEEECCCCCEEEEEEECCEECEEECCCCCEEEEECCHHHHHHHHHH
HTKVEGEIALDMREFDALLHEIRATGRLRQKSRQAFGVTDIAYPVLGPSGHAIAALTCPY
HHHCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCHH
VRRIDTHAAPCAEDVDAQLRATARHLSMLKEAAA
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1840643; 1545709 [H]