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The map label for this gene is potC [H]

Identifier: 76817648

GI number: 76817648

Start: 1924416

End: 1925270

Strand: Direct

Name: potC [H]

Synonym: BURPS1710b_A1580

Alternate gene names: 76817648

Gene position: 1924416-1925270 (Clockwise)

Preceding gene: 76818369

Following gene: 76818255

Centisome position: 60.48

GC content: 56.26

Gene sequence:

>855_bases
ATGACGTCGCGTGAACTGCGCCACTTTCCGCTTACGGCAGAAGTCGCGATTGCCGTCCTGTTGTTTCTCTATCTGCCGTT
GGCGGTTGTCGCGTGGATGAGTTTCAATCGAGGCCCATCGGCGCTTGTTTGGGAGGGTTGGAGCGTCCAGGGATACGTCG
AGGCTTGGTCTGATCCGACGCTTATCCGTGCGACGCAAAACTCCCTGATCCTGGCGTTGTCATCGATGGTTCTTTCGACC
GCCCTTGCAACGAGTGCGGCCGTCGCTGCGTGGTCACGGCAGGAAACTCGCCGCTCCGATCTGCGCGGAGTTGTAATTGC
TTTGCCGCTCGTGATACCGGAGGTTGTTCTCGCGATCGCTACGGTGATGATGTTTTCGATATTCGCGTTCGAAATCGGGT
TCGTTGCAGTCCTGTTTGCGCACGTGGTGTTTTGTGTCCCACTCGCGTATCTCCCGATCAACGCACGTCTTAAGACAATC
GATCGGACATTACTTGAGGCGGCGGCCGACTTGTCGGCTCCGCCATGGGCGGCATTTCGTCAAATCACGGTTCCTTTGGC
ATTGCCCGGTATCGTCGCCGGTGCGCTGCTTGCGTTCGTCGCGTCTATGAACGACTACGTCACCAGCTACTTCTTGGCTG
GTGCCGGCATGACCACCTTGCCTATGTACATCTTCAGCGCATTGAAGATCGGAATTACGCCAAAGGTAAATGCTATCTCG
ACAGCCGTCATTGGACTTTCGTCGATTCAACTACTGACGGTCTGGGTTCTCGGCAGGAAGGGTGCAGGACAGACTGCTAC
GCCGGGGAGATCCGAGCTGGGTCACGCGAACATTCAAACGATAGGAACCGTATGA

Upstream 100 bases:

>100_bases
CCGTTGGGCGCGGCTATGTCGTTTGTCCTACTCGCTGTCGTTCTTCTCGCCATGCTCGCGCTGCGTCTGACATCCATCCT
CCAGCGACAGGAGCTCGCTC

Downstream 100 bases:

>100_bases
AAAAAGTAGTCGGAGCGATGCTGCTGCTTGCTGTCGGTCATGCTGTCTCAGCCGAACTCCATATCGGAAGCTGGCCGGAT
TACCTGCCCGATACGCTGAT

Product: spermidine/putrescine ABC transporter permease

Products: Phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 284; Mature: 283

Protein sequence:

>284_residues
MTSRELRHFPLTAEVAIAVLLFLYLPLAVVAWMSFNRGPSALVWEGWSVQGYVEAWSDPTLIRATQNSLILALSSMVLST
ALATSAAVAAWSRQETRRSDLRGVVIALPLVIPEVVLAIATVMMFSIFAFEIGFVAVLFAHVVFCVPLAYLPINARLKTI
DRTLLEAAADLSAPPWAAFRQITVPLALPGIVAGALLAFVASMNDYVTSYFLAGAGMTTLPMYIFSALKIGITPKVNAIS
TAVIGLSSIQLLTVWVLGRKGAGQTATPGRSELGHANIQTIGTV

Sequences:

>Translated_284_residues
MTSRELRHFPLTAEVAIAVLLFLYLPLAVVAWMSFNRGPSALVWEGWSVQGYVEAWSDPTLIRATQNSLILALSSMVLST
ALATSAAVAAWSRQETRRSDLRGVVIALPLVIPEVVLAIATVMMFSIFAFEIGFVAVLFAHVVFCVPLAYLPINARLKTI
DRTLLEAAADLSAPPWAAFRQITVPLALPGIVAGALLAFVASMNDYVTSYFLAGAGMTTLPMYIFSALKIGITPKVNAIS
TAVIGLSSIQLLTVWVLGRKGAGQTATPGRSELGHANIQTIGTV
>Mature_283_residues
TSRELRHFPLTAEVAIAVLLFLYLPLAVVAWMSFNRGPSALVWEGWSVQGYVEAWSDPTLIRATQNSLILALSSMVLSTA
LATSAAVAAWSRQETRRSDLRGVVIALPLVIPEVVLAIATVMMFSIFAFEIGFVAVLFAHVVFCVPLAYLPINARLKTID
RTLLEAAADLSAPPWAAFRQITVPLALPGIVAGALLAFVASMNDYVTSYFLAGAGMTTLPMYIFSALKIGITPKVNAIST
AVIGLSSIQLLTVWVLGRKGAGQTATPGRSELGHANIQTIGTV

Specific function: Required for the activity of the bacterial periplasmic transport system of putrescine and spermidine [H]

COG id: COG1177

COG function: function code E; ABC-type spermidine/putrescine transport system, permease component II

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787368, Length=234, Percent_Identity=32.4786324786325, Blast_Score=146, Evalue=2e-36,
Organism=Escherichia coli, GI1787081, Length=249, Percent_Identity=35.3413654618474, Blast_Score=140, Evalue=1e-34,
Organism=Escherichia coli, GI1787714, Length=245, Percent_Identity=26.9387755102041, Blast_Score=74, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 30329; Mature: 30198

Theoretical pI: Translated: 9.43; Mature: 9.43

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSRELRHFPLTAEVAIAVLLFLYLPLAVVAWMSFNRGPSALVWEGWSVQGYVEAWSDPT
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHCCCCCCE
LIRATQNSLILALSSMVLSTALATSAAVAAWSRQETRRSDLRGVVIALPLVIPEVVLAIA
EEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TVMMFSIFAFEIGFVAVLFAHVVFCVPLAYLPINARLKTIDRTLLEAAADLSAPPWAAFR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHH
QITVPLALPGIVAGALLAFVASMNDYVTSYFLAGAGMTTLPMYIFSALKIGITPKVNAIS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHH
TAVIGLSSIQLLTVWVLGRKGAGQTATPGRSELGHANIQTIGTV
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCEECCC
>Mature Secondary Structure 
TSRELRHFPLTAEVAIAVLLFLYLPLAVVAWMSFNRGPSALVWEGWSVQGYVEAWSDPT
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHCCCCCCE
LIRATQNSLILALSSMVLSTALATSAAVAAWSRQETRRSDLRGVVIALPLVIPEVVLAIA
EEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TVMMFSIFAFEIGFVAVLFAHVVFCVPLAYLPINARLKTIDRTLLEAAADLSAPPWAAFR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHH
QITVPLALPGIVAGALLAFVASMNDYVTSYFLAGAGMTTLPMYIFSALKIGITPKVNAIS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHH
TAVIGLSSIQLLTVWVLGRKGAGQTATPGRSELGHANIQTIGTV
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]