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The map label for this gene is yfiF [H]

Identifier: 76817450

GI number: 76817450

Start: 350827

End: 351846

Strand: Direct

Name: yfiF [H]

Synonym: BURPS1710b_A0236

Alternate gene names: 76817450

Gene position: 350827-351846 (Clockwise)

Preceding gene: 76819573

Following gene: 76818185

Centisome position: 11.03

GC content: 69.22

Gene sequence:

>1020_bases
ATGAACCCAGACCTCGAGATCGTCCCCACCCGCCGCGACGAATCGTTTCGCGCATGGTCGCACGACTATCCGCACACGGT
CGCGAAATGGCATTTTCATCCGGAGTACGAAATCCACCTGATTCAGGGTTCGCGCGGCAAGTTCTTCGTCGGCGACCATA
TCGGCGATTTCGCGCCCGGCAACCTCGTCGTCACCGGGCCGAACCTGCCGCACAACTGGATCAGCGAGCTCGGCCCCGGC
GAGCGCGTGCCGTCGCGCGACGTCGTGCTGCAGTTCTCGCGCGACGCGGCCGAGAAGATGGTGGCCGCGTTCGCCGAGCT
GCAGCCGGTGCTCGACCTGATCGACGAAGCGTCGCGCGGCGTGCAGTTTCCGGACGAGATCGGGCTCGCCGTCGCGCCGC
TGATGCTCGAGCTCGCGAGCGCGCACGGCTGCCGGCGCGTCGAGGTGCTGATGGCGCTGTTCGACCGGCTGGCGTCGTGC
GCCGCGCGTCGCACGCTCGCCGGCCCCGGCTACCGGATCGACGCGCAGCACTACATGTCGTCGACGATCAACCAGGTGCT
CGCGTACCTGCGGCAGAACCTGCCGGGCGCGCTACGCGAGGCGGACGTCGCCGAATTCGCCGGCATGAGCGTGAGCACGT
TCACGCGCTTCTTCCGCCGGCACACGGGCTCGACGTTCGTCCAGTATCTGAACCGGCTGCGGATCAACGAAGCGTGCGAG
CTGCTGATGTGCTCGGCGCTCAGCGTCACCGACATCTGCTACCGCATCGGCTTCAACAACCTGTCGAACTTCAACCGGCA
ATTCCTCGCGATGAAGGGGATGCCGCCGTCGCGCTTTCGCGCGCTGCATCGGTTGAACGAGCCGCATGACGCGCCCGAAC
CGCACGAGCCGCACGAGCCGCACGCGTCGCTCGCGCCGGCCGCCGCGCCCGCGGCCCCGGGCGCGGCGGCCCGGCCCCCC
GAGCGCGCCGCACCCACCGCGCGCGCCGTCATCCATTCGCACCGGAGCCTCCACCCGTGA

Upstream 100 bases:

>100_bases
CCGGCGCCGCGATGCGGCCTTCGCCGGGCGCGCCGCACCGATTCACGATGTCGCGCCCGTGAACGGCGGGCGCCCGGCCG
TGCACGCGCAGGAGCGACAG

Downstream 100 bases:

>100_bases
CCTATCTCGGCATCGATCTCGGCACATCCGAAGTCAAGGCGATCCTGACCGACGCCGATTCCGCGCCGCTCGCCGCCGGC
GGCGCGCCGCTCGCCGTCGA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 339; Mature: 339

Protein sequence:

>339_residues
MNPDLEIVPTRRDESFRAWSHDYPHTVAKWHFHPEYEIHLIQGSRGKFFVGDHIGDFAPGNLVVTGPNLPHNWISELGPG
ERVPSRDVVLQFSRDAAEKMVAAFAELQPVLDLIDEASRGVQFPDEIGLAVAPLMLELASAHGCRRVEVLMALFDRLASC
AARRTLAGPGYRIDAQHYMSSTINQVLAYLRQNLPGALREADVAEFAGMSVSTFTRFFRRHTGSTFVQYLNRLRINEACE
LLMCSALSVTDICYRIGFNNLSNFNRQFLAMKGMPPSRFRALHRLNEPHDAPEPHEPHEPHASLAPAAAPAAPGAAARPP
ERAAPTARAVIHSHRSLHP

Sequences:

>Translated_339_residues
MNPDLEIVPTRRDESFRAWSHDYPHTVAKWHFHPEYEIHLIQGSRGKFFVGDHIGDFAPGNLVVTGPNLPHNWISELGPG
ERVPSRDVVLQFSRDAAEKMVAAFAELQPVLDLIDEASRGVQFPDEIGLAVAPLMLELASAHGCRRVEVLMALFDRLASC
AARRTLAGPGYRIDAQHYMSSTINQVLAYLRQNLPGALREADVAEFAGMSVSTFTRFFRRHTGSTFVQYLNRLRINEACE
LLMCSALSVTDICYRIGFNNLSNFNRQFLAMKGMPPSRFRALHRLNEPHDAPEPHEPHEPHASLAPAAAPAAPGAAARPP
ERAAPTARAVIHSHRSLHP
>Mature_339_residues
MNPDLEIVPTRRDESFRAWSHDYPHTVAKWHFHPEYEIHLIQGSRGKFFVGDHIGDFAPGNLVVTGPNLPHNWISELGPG
ERVPSRDVVLQFSRDAAEKMVAAFAELQPVLDLIDEASRGVQFPDEIGLAVAPLMLELASAHGCRRVEVLMALFDRLASC
AARRTLAGPGYRIDAQHYMSSTINQVLAYLRQNLPGALREADVAEFAGMSVSTFTRFFRRHTGSTFVQYLNRLRINEACE
LLMCSALSVTDICYRIGFNNLSNFNRQFLAMKGMPPSRFRALHRLNEPHDAPEPHEPHEPHASLAPAAAPAAPGAAARPP
ERAAPTARAVIHSHRSLHP

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 37681; Mature: 37681

Theoretical pI: Translated: 7.32; Mature: 7.32

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPDLEIVPTRRDESFRAWSHDYPHTVAKWHFHPEYEIHLIQGSRGKFFVGDHIGDFAPG
CCCCCEEEECCCCCCHHHCCCCCCCHHHEEEECCCEEEEEEECCCCCEEECCCCCCCCCC
NLVVTGPNLPHNWISELGPGERVPSRDVVLQFSRDAAEKMVAAFAELQPVLDLIDEASRG
CEEEECCCCCHHHHHHCCCCCCCCCHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCC
VQFPDEIGLAVAPLMLELASAHGCRRVEVLMALFDRLASCAARRTLAGPGYRIDAQHYMS
CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEECHHHHHH
STINQVLAYLRQNLPGALREADVAEFAGMSVSTFTRFFRRHTGSTFVQYLNRLRINEACE
HHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
LLMCSALSVTDICYRIGFNNLSNFNRQFLAMKGMPPSRFRALHRLNEPHDAPEPHEPHEP
HHHHHHHHHHHHHHHHCCHHHHHHCHHHEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCC
HASLAPAAAPAAPGAAARPPERAAPTARAVIHSHRSLHP
CCCCCCCCCCCCCCCCCCCCHHCCHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNPDLEIVPTRRDESFRAWSHDYPHTVAKWHFHPEYEIHLIQGSRGKFFVGDHIGDFAPG
CCCCCEEEECCCCCCHHHCCCCCCCHHHEEEECCCEEEEEEECCCCCEEECCCCCCCCCC
NLVVTGPNLPHNWISELGPGERVPSRDVVLQFSRDAAEKMVAAFAELQPVLDLIDEASRG
CEEEECCCCCHHHHHHCCCCCCCCCHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCC
VQFPDEIGLAVAPLMLELASAHGCRRVEVLMALFDRLASCAARRTLAGPGYRIDAQHYMS
CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEECHHHHHH
STINQVLAYLRQNLPGALREADVAEFAGMSVSTFTRFFRRHTGSTFVQYLNRLRINEACE
HHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
LLMCSALSVTDICYRIGFNNLSNFNRQFLAMKGMPPSRFRALHRLNEPHDAPEPHEPHEP
HHHHHHHHHHHHHHHHCCHHHHHHCHHHEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCC
HASLAPAAAPAAPGAAARPPERAAPTARAVIHSHRSLHP
CCCCCCCCCCCCCCCCCCCCHHCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8704981; 9384377 [H]