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The map label for this gene is hdrB2 [H]

Identifier: 75909853

GI number: 75909853

Start: 4553466

End: 4554371

Strand: Direct

Name: hdrB2 [H]

Synonym: Ava_3648

Alternate gene names: 75909853

Gene position: 4553466-4554371 (Clockwise)

Preceding gene: 75909848

Following gene: 75909859

Centisome position: 71.53

GC content: 42.27

Gene sequence:

>906_bases
ATGCTATCTCAGACACTAAAATATGCTTACTTTCCTGGTTGTGTTGCCCAAGGTGCTTGTCGGGAACTGTATCAGTCTAC
TCAAGCTCTTACCCAAGCTTTAGGTATTCAACTGATTGAATTGAAAAAAGCTGCCTGCTGTGGTTCTGGCACTTTTAAGG
AAGACTCCCAACTGCTAGAAGATACAGTCAATGCTCGTAATATTGCCCTAGCAGAAGAATTAAATTTACCTTTACTAACT
CATTGCAGTACTTGTCAGGGTGTGATTGGTCATGTTAATGAGCGTTTGCAAGAATCTCAGACCAGTAACCCTGATTATCT
AGAACAGGTGAATGGTCTGTTACACAAAGAAGGTTGTTCACCCTATCAGGGTAGTACAGAGGTGAAACATCTGCTTTACG
CTTTAGTCACAGACTACGGCTTAGAGGAAATTACCAAACGTGTGACCCGTAAGCTATCTGGTTTGAAGTGTGCAGCTTTT
TATGGCTGCTATCTACTCCGCGCCCAAAAGTTAATGCCTTACGATGATCCTTACAACCCACAAGCGATGGAAAATGTTTT
TCAATCTGTGGGGGCAGAGCCAATTTATTATCGTGGACGGACACAATGTTGTGGTTGGCCTTTGTCTAGTTATGCCACTA
ATGAATCTTTTAAGATGGCGGGGATGCACCTTCAAGATGCCTTAACGGCAGGGGCGGATTGTTTAGTTACCCCTTGTCCT
TTATGTCATCTCAATTTAGATTCTCGTCAACCAGAAGTGGAAAAAGTTATCGGTCATAAACTAGGTTTGCCAGTGCTGCA
CTTACCACAGTTAATTGCTTTGGCATTAGGTGTTAGTCCTGAAGAATTAGGATTAGATCGCCACATTGTTTCGACAAAGC
CAGTGTTAGAGAAATTAGGTCTTTAA

Upstream 100 bases:

>100_bases
CAAATGTCCAAAAAAAATTACCATTCCTCTTAAGTATGGCCTGTGAGGGGTGATAGAAAAGTTATCATCGGGGCAGTTGC
CCTAAAATAAACCTAATTTT

Downstream 100 bases:

>100_bases
TCGGGACTTTCGGGTTGGGAGGGTGTAGGGGTGTGAGGGTGTGAGGGTGTAAGGAAAAGAAAGATTTATCCCTAAACCCC
TAAACCCCTAAACCCCTAAA

Product: succinate dehydrogenase subunit C

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MLSQTLKYAYFPGCVAQGACRELYQSTQALTQALGIQLIELKKAACCGSGTFKEDSQLLEDTVNARNIALAEELNLPLLT
HCSTCQGVIGHVNERLQESQTSNPDYLEQVNGLLHKEGCSPYQGSTEVKHLLYALVTDYGLEEITKRVTRKLSGLKCAAF
YGCYLLRAQKLMPYDDPYNPQAMENVFQSVGAEPIYYRGRTQCCGWPLSSYATNESFKMAGMHLQDALTAGADCLVTPCP
LCHLNLDSRQPEVEKVIGHKLGLPVLHLPQLIALALGVSPEELGLDRHIVSTKPVLEKLGL

Sequences:

>Translated_301_residues
MLSQTLKYAYFPGCVAQGACRELYQSTQALTQALGIQLIELKKAACCGSGTFKEDSQLLEDTVNARNIALAEELNLPLLT
HCSTCQGVIGHVNERLQESQTSNPDYLEQVNGLLHKEGCSPYQGSTEVKHLLYALVTDYGLEEITKRVTRKLSGLKCAAF
YGCYLLRAQKLMPYDDPYNPQAMENVFQSVGAEPIYYRGRTQCCGWPLSSYATNESFKMAGMHLQDALTAGADCLVTPCP
LCHLNLDSRQPEVEKVIGHKLGLPVLHLPQLIALALGVSPEELGLDRHIVSTKPVLEKLGL
>Mature_301_residues
MLSQTLKYAYFPGCVAQGACRELYQSTQALTQALGIQLIELKKAACCGSGTFKEDSQLLEDTVNARNIALAEELNLPLLT
HCSTCQGVIGHVNERLQESQTSNPDYLEQVNGLLHKEGCSPYQGSTEVKHLLYALVTDYGLEEITKRVTRKLSGLKCAAF
YGCYLLRAQKLMPYDDPYNPQAMENVFQSVGAEPIYYRGRTQCCGWPLSSYATNESFKMAGMHLQDALTAGADCLVTPCP
LCHLNLDSRQPEVEKVIGHKLGLPVLHLPQLIALALGVSPEELGLDRHIVSTKPVLEKLGL

Specific function: Part of a complex that catalyzes the reversible reduction of CoM-S-S-CoB to the thiol-coenzymes H-S-CoM (coenzyme M) and H-S-CoB (coenzyme B). HdrB may have a function in energy transduction [H]

COG id: COG2048

COG function: function code C; Heterodisulfide reductase, subunit B

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hdrB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017678
- InterPro:   IPR004017 [H]

Pfam domain/function: PF02754 CCG [H]

EC number: =1.8.98.1 [H]

Molecular weight: Translated: 33090; Mature: 33090

Theoretical pI: Translated: 6.22; Mature: 6.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
4.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSQTLKYAYFPGCVAQGACRELYQSTQALTQALGIQLIELKKAACCGSGTFKEDSQLLE
CCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCHHHHHHHH
DTVNARNIALAEELNLPLLTHCSTCQGVIGHVNERLQESQTSNPDYLEQVNGLLHKEGCS
HHHCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCC
PYQGSTEVKHLLYALVTDYGLEEITKRVTRKLSGLKCAAFYGCYLLRAQKLMPYDDPYNP
CCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCH
QAMENVFQSVGAEPIYYRGRTQCCGWPLSSYATNESFKMAGMHLQDALTAGADCLVTPCP
HHHHHHHHHHCCCCEEECCCCCCCCCCHHHHCCCCCHHHHCHHHHHHHHCCCCCEECCCC
LCHLNLDSRQPEVEKVIGHKLGLPVLHLPQLIALALGVSPEELGLDRHIVSTKPVLEKLG
EEECCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHC
L
C
>Mature Secondary Structure
MLSQTLKYAYFPGCVAQGACRELYQSTQALTQALGIQLIELKKAACCGSGTFKEDSQLLE
CCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCHHHHHHHH
DTVNARNIALAEELNLPLLTHCSTCQGVIGHVNERLQESQTSNPDYLEQVNGLLHKEGCS
HHHCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCC
PYQGSTEVKHLLYALVTDYGLEEITKRVTRKLSGLKCAAFYGCYLLRAQKLMPYDDPYNP
CCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCH
QAMENVFQSVGAEPIYYRGRTQCCGWPLSSYATNESFKMAGMHLQDALTAGADCLVTPCP
HHHHHHHHHHCCCCEEECCCCCCCCCCHHHHCCCCCHHHHCHHHHHHHHCCCCCEECCCC
LCHLNLDSRQPEVEKVIGHKLGLPVLHLPQLIALALGVSPEELGLDRHIVSTKPVLEKLG
EEECCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHC
L
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]