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The map label for this gene is 75909813

Identifier: 75909813

GI number: 75909813

Start: 4500796

End: 4502565

Strand: Direct

Name: 75909813

Synonym: Ava_3608

Alternate gene names: NA

Gene position: 4500796-4502565 (Clockwise)

Preceding gene: 75909812

Following gene: 75909815

Centisome position: 70.7

GC content: 46.1

Gene sequence:

>1770_bases
ATGGCTAAAAACGAAACTAATGCTGGCCTAAAAATTATTCCCTTAGGCGGTTTACATGAAATTGGTAAAAACACCTGTGT
TTTTGAATATGATGATGAAATCATTCTTTTAGATGCAGGGTTGGCTTTCCCCACAGAGGCGATGCACGGGGTAAATATCG
TCCTGCCAGATATGACCTATCTACGGGAAAATCGCCACAAAATCAAAGGTATGGTTGTTACCCACGGCCATGAAGATCAT
ATTGGTGGGATTGCTTTTCACCTCAAACAATTTGACATTCCAGTAATTTATGGGCCTAGACTAGCAATGGCAATGCTAGA
GGGTAAATTAGAAGAAGCTGGAGTACGCGATCGCACAGAATTAAGAAAAGTTTTACCCCGTGATGTTGTACGCATTGGTA
AATCATTTTTTGTCGAGTACATCCGCAACACCCACTCCATTGCTGATAGCTTCACCGTTGCCATTCACACCCCCTTAGGT
GTGGTGATTCACACGGGAGACTTCAAATTTGACCACACCCCAGTTGATGGTGAAAAATTTGACCTGCAACGCCTGGCAGA
ACACGGCGAAAAAGGCGTACTTTGTCTGTTGAGTGATTCCACTAACTCGGAAGTCCCAGGCTTCACCCCTTCAGAAGCAT
CAGTTTTTCCCAATCTAGATAGAGTTTTTAGTCAAGCGGAAGGACGGCTATTCGTCACCACCTTTGCTTCCAGCGTCCAT
CGCATCAACATGATTTTGCAACTGGCGAAAAAGCATAACCGCGTTGTCACAGTTGTTGGGCGTTCCATGCTGAACTTGAT
TGCCCACGCCCGTAATTTGGGTTACATCAAGTGTGAAGATAATCTGTTGCAGCCCTTGCACATGGTACGTAATCTGCCAG
ACGATAATGTTCTGGTTCTCACCACTGGTTCTCAAGGTGAAACAATGGCAGCCATGACCAGGATTGCCAACAAAGAACAC
CCCCATATTAAAATCCGTCAAGGCGATACTGTTGTCTTCTCTGCTAACCCAATTCCGGGGAACACAATTGCTGTAGTCAA
TACCATCGACAAATTGATGCAGCAAGGGGCGAAAGTAGTTTATGGAAGAGACCAAGGGATTCACGTTTCGGGTCACGGCT
GTCAAGAAGACCAAAAGCTGATGATTGCCTTAACTCGACCCAAGTTCTTTGTTCCAGTCCACGGTGAACATCGGATGTTG
GTGAAACATTCCCAAACCGCCCAGAAGTCAGGCATTCCCGCCGAGAATATGGTGATTATTCAAAATGGGGATATCATCGA
ACTGACGGAAGACTCAATTCGTGTCGCGGGGAAAGTTCAATCTGGTATCGAGTTAGTCGATACTACAAGCTCTGGAATGG
TCAGCGCCAAAGTACTGCAAGAACGTCAACGCATGGCAGAGGAAGGACTGGTGACTATTGCAGCTGCTATTGATTGGCAA
GGTAAATTGTTGGCTAAACCAGAAATTCACCTGCGTGGTGTTGTTACTAGTGTAGAGCGATCGCTGTTACAAAAGTGGGT
ACAACAGCGTATTGAAGAAATTTTGAGCGTGCGTTGGTCAGAGTTTGCGACTTCTGAAGGTGAACAGCCTGAGATTGATT
GGGGTGGTTTGCAAGGAACTTTAGAACGGGAGTTGCAACGTTCTATTCGTCGTGAGTTGCAATGTCAGCCATCGGTTACT
TTGCTGATGCAAATTCCTGATGAGCCACCTGTGAAGGTTGCTGATGGTAGAAGGCGGCGGACTCGCACGGCTGCTCAAGT
AGCTTCTTAG

Upstream 100 bases:

>100_bases
CTGCTTGTGAAAAGTAGGCTCATGTTTGTCATTCCTAAAAGAAGCTGAATTTGCAAATTTACTTAAAGTCTAAAACAACA
AACAACAATCTCAGGAGAAA

Downstream 100 bases:

>100_bases
AGAGTATTAAGAGGTAAAGCTCACGCAAAGGCGCAAAGACGCAAAGGCTCGTAAGGTGTCTTTGCGTTTTGCTGTGGGAT
ATTAGGCGTATACAAGTTCT

Product: hypothetical protein

Products: NA

Alternate protein names: RNase J [H]

Number of amino acids: Translated: 589; Mature: 588

Protein sequence:

>589_residues
MAKNETNAGLKIIPLGGLHEIGKNTCVFEYDDEIILLDAGLAFPTEAMHGVNIVLPDMTYLRENRHKIKGMVVTHGHEDH
IGGIAFHLKQFDIPVIYGPRLAMAMLEGKLEEAGVRDRTELRKVLPRDVVRIGKSFFVEYIRNTHSIADSFTVAIHTPLG
VVIHTGDFKFDHTPVDGEKFDLQRLAEHGEKGVLCLLSDSTNSEVPGFTPSEASVFPNLDRVFSQAEGRLFVTTFASSVH
RINMILQLAKKHNRVVTVVGRSMLNLIAHARNLGYIKCEDNLLQPLHMVRNLPDDNVLVLTTGSQGETMAAMTRIANKEH
PHIKIRQGDTVVFSANPIPGNTIAVVNTIDKLMQQGAKVVYGRDQGIHVSGHGCQEDQKLMIALTRPKFFVPVHGEHRML
VKHSQTAQKSGIPAENMVIIQNGDIIELTEDSIRVAGKVQSGIELVDTTSSGMVSAKVLQERQRMAEEGLVTIAAAIDWQ
GKLLAKPEIHLRGVVTSVERSLLQKWVQQRIEEILSVRWSEFATSEGEQPEIDWGGLQGTLERELQRSIRRELQCQPSVT
LLMQIPDEPPVKVADGRRRRTRTAAQVAS

Sequences:

>Translated_589_residues
MAKNETNAGLKIIPLGGLHEIGKNTCVFEYDDEIILLDAGLAFPTEAMHGVNIVLPDMTYLRENRHKIKGMVVTHGHEDH
IGGIAFHLKQFDIPVIYGPRLAMAMLEGKLEEAGVRDRTELRKVLPRDVVRIGKSFFVEYIRNTHSIADSFTVAIHTPLG
VVIHTGDFKFDHTPVDGEKFDLQRLAEHGEKGVLCLLSDSTNSEVPGFTPSEASVFPNLDRVFSQAEGRLFVTTFASSVH
RINMILQLAKKHNRVVTVVGRSMLNLIAHARNLGYIKCEDNLLQPLHMVRNLPDDNVLVLTTGSQGETMAAMTRIANKEH
PHIKIRQGDTVVFSANPIPGNTIAVVNTIDKLMQQGAKVVYGRDQGIHVSGHGCQEDQKLMIALTRPKFFVPVHGEHRML
VKHSQTAQKSGIPAENMVIIQNGDIIELTEDSIRVAGKVQSGIELVDTTSSGMVSAKVLQERQRMAEEGLVTIAAAIDWQ
GKLLAKPEIHLRGVVTSVERSLLQKWVQQRIEEILSVRWSEFATSEGEQPEIDWGGLQGTLERELQRSIRRELQCQPSVT
LLMQIPDEPPVKVADGRRRRTRTAAQVAS
>Mature_588_residues
AKNETNAGLKIIPLGGLHEIGKNTCVFEYDDEIILLDAGLAFPTEAMHGVNIVLPDMTYLRENRHKIKGMVVTHGHEDHI
GGIAFHLKQFDIPVIYGPRLAMAMLEGKLEEAGVRDRTELRKVLPRDVVRIGKSFFVEYIRNTHSIADSFTVAIHTPLGV
VIHTGDFKFDHTPVDGEKFDLQRLAEHGEKGVLCLLSDSTNSEVPGFTPSEASVFPNLDRVFSQAEGRLFVTTFASSVHR
INMILQLAKKHNRVVTVVGRSMLNLIAHARNLGYIKCEDNLLQPLHMVRNLPDDNVLVLTTGSQGETMAAMTRIANKEHP
HIKIRQGDTVVFSANPIPGNTIAVVNTIDKLMQQGAKVVYGRDQGIHVSGHGCQEDQKLMIALTRPKFFVPVHGEHRMLV
KHSQTAQKSGIPAENMVIIQNGDIIELTEDSIRVAGKVQSGIELVDTTSSGMVSAKVLQERQRMAEEGLVTIAAAIDWQG
KLLAKPEIHLRGVVTSVERSLLQKWVQQRIEEILSVRWSEFATSEGEQPEIDWGGLQGTLERELQRSIRRELQCQPSVTL
LMQIPDEPPVKVADGRRRRTRTAAQVAS

Specific function: Unknown

COG id: COG0595

COG function: function code R; Predicted hydrolase of the metallo-beta-lactamase superfamily

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the metallo-beta-lactamase superfamily. RNA-metabolizing metallo-beta-lactamase-like family. RNase J subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001279
- InterPro:   IPR011108
- InterPro:   IPR004613
- InterPro:   IPR001587 [H]

Pfam domain/function: PF00753 Lactamase_B; PF07521 RMMBL [H]

EC number: NA

Molecular weight: Translated: 65424; Mature: 65293

Theoretical pI: Translated: 7.17; Mature: 7.17

Prosite motif: PS01292 UPF0036

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKNETNAGLKIIPLGGLHEIGKNTCVFEYDDEIILLDAGLAFPTEAMHGVNIVLPDMTY
CCCCCCCCCEEEEECCCHHHHCCCCEEEEECCCEEEEECCCCCCCHHHCCCEEEECCHHH
LRENRHKIKGMVVTHGHEDHIGGIAFHLKQFDIPVIYGPRLAMAMLEGKLEEAGVRDRTE
HHCCCCEEEEEEEECCCCCCCCCEEEEEECCCCCEEECCHHHHHHHHCCHHHCCCCCHHH
LRKVLPRDVVRIGKSFFVEYIRNTHSIADSFTVAIHTPLGVVIHTGDFKFDHTPVDGEKF
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEECCCCEECCCCCCCCHH
DLQRLAEHGEKGVLCLLSDSTNSEVPGFTPSEASVFPNLDRVFSQAEGRLFVTTFASSVH
HHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEHHHHHH
RINMILQLAKKHNRVVTVVGRSMLNLIAHARNLGYIKCEDNLLQPLHMVRNLPDDNVLVL
HHHHHHHHHHHCCCEEEEHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCCEEEE
TTGSQGETMAAMTRIANKEHPHIKIRQGDTVVFSANPIPGNTIAVVNTIDKLMQQGAKVV
EECCCCCHHHHHHHHCCCCCCEEEEECCCEEEEECCCCCCCCEEHHHHHHHHHHCCCEEE
YGRDQGIHVSGHGCQEDQKLMIALTRPKFFVPVHGEHRMLVKHSQTAQKSGIPAENMVII
EECCCCEEECCCCCCCCCEEEEEEECCEEEEEECCCCEEEEECCCHHHHCCCCCCCEEEE
QNGDIIELTEDSIRVAGKVQSGIELVDTTSSGMVSAKVLQERQRMAEEGLVTIAAAIDWQ
ECCCEEEECCCCCEEEEHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCEEEEEEEECCC
GKLLAKPEIHLRGVVTSVERSLLQKWVQQRIEEILSVRWSEFATSEGEQPEIDWGGLQGT
CCEEECCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH
LERELQRSIRRELQCQPSVTLLMQIPDEPPVKVADGRRRRTRTAAQVAS
HHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHCC
>Mature Secondary Structure 
AKNETNAGLKIIPLGGLHEIGKNTCVFEYDDEIILLDAGLAFPTEAMHGVNIVLPDMTY
CCCCCCCCEEEEECCCHHHHCCCCEEEEECCCEEEEECCCCCCCHHHCCCEEEECCHHH
LRENRHKIKGMVVTHGHEDHIGGIAFHLKQFDIPVIYGPRLAMAMLEGKLEEAGVRDRTE
HHCCCCEEEEEEEECCCCCCCCCEEEEEECCCCCEEECCHHHHHHHHCCHHHCCCCCHHH
LRKVLPRDVVRIGKSFFVEYIRNTHSIADSFTVAIHTPLGVVIHTGDFKFDHTPVDGEKF
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEECCCCEECCCCCCCCHH
DLQRLAEHGEKGVLCLLSDSTNSEVPGFTPSEASVFPNLDRVFSQAEGRLFVTTFASSVH
HHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEHHHHHH
RINMILQLAKKHNRVVTVVGRSMLNLIAHARNLGYIKCEDNLLQPLHMVRNLPDDNVLVL
HHHHHHHHHHHCCCEEEEHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCCEEEE
TTGSQGETMAAMTRIANKEHPHIKIRQGDTVVFSANPIPGNTIAVVNTIDKLMQQGAKVV
EECCCCCHHHHHHHHCCCCCCEEEEECCCEEEEECCCCCCCCEEHHHHHHHHHHCCCEEE
YGRDQGIHVSGHGCQEDQKLMIALTRPKFFVPVHGEHRMLVKHSQTAQKSGIPAENMVII
EECCCCEEECCCCCCCCCEEEEEEECCEEEEEECCCCEEEEECCCHHHHCCCCCCCEEEE
QNGDIIELTEDSIRVAGKVQSGIELVDTTSSGMVSAKVLQERQRMAEEGLVTIAAAIDWQ
ECCCEEEECCCCCEEEEHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCEEEEEEEECCC
GKLLAKPEIHLRGVVTSVERSLLQKWVQQRIEEILSVRWSEFATSEGEQPEIDWGGLQGT
CCEEECCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH
LERELQRSIRRELQCQPSVTLLMQIPDEPPVKVADGRRRRTRTAAQVAS
HHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]