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The map label for this gene is jag [H]

Identifier: 75909642

GI number: 75909642

Start: 4267137

End: 4267655

Strand: Direct

Name: jag [H]

Synonym: Ava_3436

Alternate gene names: 75909642

Gene position: 4267137-4267655 (Clockwise)

Preceding gene: 75909641

Following gene: 75909643

Centisome position: 67.03

GC content: 42.77

Gene sequence:

>519_bases
ATGAGCAATAATCCCATGCAGAGAGGTCAGCAGTGGTTACAATCACTGCTGGAACTCACTGGGGTATCAGCTGAGATTCA
CGGTAGTGTAGAAACTGCTCAATCTCACAATGAAGATTCCCAAGAAACAGATGGTTACTGGTTGACAATTGACGCAACTA
ATTTAAACCCACAGCAAATTCAAACTTTAATTGGTGCTGATGGCTCTGTATTAGATGCAATTCAGTATTTAGTTAATTCC
ACTCTCAATATCAATCAACCCCAGGAAGGACAAGCTTCCTACACCGTGGAATTGAACGGTTATAGGGTTAAACGACAAGC
CGAAATTCAACAAATCGCAGAAACAGCCGCCGAGCAGGTACGTTCTACAGGTCAAGAAGTAGAGATTAAATCCCTCAGTT
CTGCGGAACGGCGTTTAGTACACACTTTCCTAAAAGACTTTGGCGATTTAGAAACCTTTAGCCGTGGTAAAGAACCCCAT
CGTCATTTAGTTGTGCGTCCGGCTGTGAATGAATTATGA

Upstream 100 bases:

>100_bases
ACAAAAAATTGTAGAAACTCAGGAAAAACAAGCGCAGGCTGAACAAAAGACATTACCTTTTGAGCCAAAAAGTTCCAAGA
AAAAGACCACAGGTTAATAA

Downstream 100 bases:

>100_bases
GAGGCTAGAATTTAGAGGCTAGAGGTTAGAAAACACATATTTTACCTAGTCCCCAATCCCCAGTCTGCATATTTATTCTT
CCTAAAAGCTAAACTAAAAA

Product: single-stranded nucleic acid binding R3H

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 172; Mature: 171

Protein sequence:

>172_residues
MSNNPMQRGQQWLQSLLELTGVSAEIHGSVETAQSHNEDSQETDGYWLTIDATNLNPQQIQTLIGADGSVLDAIQYLVNS
TLNINQPQEGQASYTVELNGYRVKRQAEIQQIAETAAEQVRSTGQEVEIKSLSSAERRLVHTFLKDFGDLETFSRGKEPH
RHLVVRPAVNEL

Sequences:

>Translated_172_residues
MSNNPMQRGQQWLQSLLELTGVSAEIHGSVETAQSHNEDSQETDGYWLTIDATNLNPQQIQTLIGADGSVLDAIQYLVNS
TLNINQPQEGQASYTVELNGYRVKRQAEIQQIAETAAEQVRSTGQEVEIKSLSSAERRLVHTFLKDFGDLETFSRGKEPH
RHLVVRPAVNEL
>Mature_171_residues
SNNPMQRGQQWLQSLLELTGVSAEIHGSVETAQSHNEDSQETDGYWLTIDATNLNPQQIQTLIGADGSVLDAIQYLVNST
LNINQPQEGQASYTVELNGYRVKRQAEIQQIAETAAEQVRSTGQEVEIKSLSSAERRLVHTFLKDFGDLETFSRGKEPHR
HLVVRPAVNEL

Specific function: Unknown

COG id: COG1847

COG function: function code R; Predicted RNA-binding protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 R3H domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001374 [H]

Pfam domain/function: PF01424 R3H [H]

EC number: NA

Molecular weight: Translated: 19200; Mature: 19069

Theoretical pI: Translated: 4.60; Mature: 4.60

Prosite motif: PS51061 R3H

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNNPMQRGQQWLQSLLELTGVSAEIHGSVETAQSHNEDSQETDGYWLTIDATNLNPQQI
CCCCHHHHHHHHHHHHHHHHCCCHHCCCCHHHHHCCCCCCCCCCCEEEEEEECCCCHHHH
QTLIGADGSVLDAIQYLVNSTLNINQPQEGQASYTVELNGYRVKRQAEIQQIAETAAEQV
HHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCEEEHHHHHHHHHHHHHHHHH
RSTGQEVEIKSLSSAERRLVHTFLKDFGDLETFSRGKEPHRHLVVRPAVNEL
HHCCCCEEHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCEEEECCCCCCC
>Mature Secondary Structure 
SNNPMQRGQQWLQSLLELTGVSAEIHGSVETAQSHNEDSQETDGYWLTIDATNLNPQQI
CCCHHHHHHHHHHHHHHHHCCCHHCCCCHHHHHCCCCCCCCCCCEEEEEEECCCCHHHH
QTLIGADGSVLDAIQYLVNSTLNINQPQEGQASYTVELNGYRVKRQAEIQQIAETAAEQV
HHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCEEEHHHHHHHHHHHHHHHHH
RSTGQEVEIKSLSSAERRLVHTFLKDFGDLETFSRGKEPHRHLVVRPAVNEL
HHCCCCEEHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10427704; 11058132 [H]