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The map label for this gene is ndhI

Identifier: 75908927

GI number: 75908927

Start: 3352668

End: 3353252

Strand: Direct

Name: ndhI

Synonym: Ava_2715

Alternate gene names: 75908927

Gene position: 3352668-3353252 (Clockwise)

Preceding gene: 75908926

Following gene: 75908928

Centisome position: 52.67

GC content: 47.01

Gene sequence:

>585_bases
ATGCTAAAGTTCCTCAAGCAAGTTGGTGATTACGCCAAAGAAGCAGTACAAGCCGGTCGTTACATTGGTCAAGGGCTATC
TGTGACTTTCGACCATATGCGCCGCCGTCCTGTTACTGTACAGTACCCCTACGAAAAACTCATTCCTGGTGAACGCTTTC
GTGGTCGGATTCACTACGAATTTGACAAGTGCATCGCTTGTGAAGTTTGTGTAAGGGTTTGTCCTATCAATTTACCTGTA
GTTGATTGGGAATTCGACAAAGCTACTAAGAAGAAAAAACTTAACCACTATAGTATCGATTTTGGTGTCTGTATTTTCTG
CGGTAACTGTGTTGAGTACTGCCCAACAAACTGTCTATCAATGACAGAAGAGTACGAGCTGGCGACTTACGATCGCCATG
AACTCAACTATGATAGTGTGGCTTTAGGTCGTCTCCCCTACAAAGTTACCGACGACCCGATGGTGACACCACTCCGGGAA
CTCGTTTACCTACCTAAAGGTGTACTTGACCCCCACGACCTACCCGCCAATGCGCCCCGCGCTGGCGCACGTCCAGAAGA
CTTGGTAGAAAAAACAGAAGCATGA

Upstream 100 bases:

>100_bases
TTCGGCGGGTAATCGGTGATCGGTAATCGGTAATGGAAAAATCATTACCAATTACCTGTTACCAATTACCAATTACCTCA
AAAGAGTAGAGAGACACAAA

Downstream 100 bases:

>100_bases
TAGTAGTCAATAGTCGGTAGTCAGTAGTCAGTGGCAAAAAATATGAAATAGCGACTGACAACTGACAACTGACAACTAAC
AACTGACAGAGGAAAAAAAA

Product: NADH dehydrogenase subunit I

Products: NAD+; ubiquinol

Alternate protein names: NAD(P)H dehydrogenase I subunit I; NDH-1 subunit I; NDH-I

Number of amino acids: Translated: 194; Mature: 194

Protein sequence:

>194_residues
MLKFLKQVGDYAKEAVQAGRYIGQGLSVTFDHMRRRPVTVQYPYEKLIPGERFRGRIHYEFDKCIACEVCVRVCPINLPV
VDWEFDKATKKKKLNHYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELATYDRHELNYDSVALGRLPYKVTDDPMVTPLRE
LVYLPKGVLDPHDLPANAPRAGARPEDLVEKTEA

Sequences:

>Translated_194_residues
MLKFLKQVGDYAKEAVQAGRYIGQGLSVTFDHMRRRPVTVQYPYEKLIPGERFRGRIHYEFDKCIACEVCVRVCPINLPV
VDWEFDKATKKKKLNHYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELATYDRHELNYDSVALGRLPYKVTDDPMVTPLRE
LVYLPKGVLDPHDLPANAPRAGARPEDLVEKTEA
>Mature_194_residues
MLKFLKQVGDYAKEAVQAGRYIGQGLSVTFDHMRRRPVTVQYPYEKLIPGERFRGRIHYEFDKCIACEVCVRVCPINLPV
VDWEFDKATKKKKLNHYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELATYDRHELNYDSVALGRLPYKVTDDPMVTPLRE
LVYLPKGVLDPHDLPANAPRAGARPEDLVEKTEA

Specific function: NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone

COG id: COG1143

COG function: function code C; Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I)

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains

Homologues:

Organism=Homo sapiens, GI4505371, Length=143, Percent_Identity=31.4685314685315, Blast_Score=78, Evalue=4e-15,
Organism=Escherichia coli, GI1789075, Length=102, Percent_Identity=36.2745098039216, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1788617, Length=118, Percent_Identity=32.2033898305085, Blast_Score=64, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17555194, Length=124, Percent_Identity=31.4516129032258, Blast_Score=72, Evalue=1e-13,
Organism=Drosophila melanogaster, GI17864306, Length=124, Percent_Identity=33.0645161290323, Blast_Score=79, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NDHI_ANAVT (Q3M9K8)

Other databases:

- EMBL:   CP000117
- RefSeq:   YP_323223.1
- ProteinModelPortal:   Q3M9K8
- SMR:   Q3M9K8
- STRING:   Q3M9K8
- GeneID:   3682213
- GenomeReviews:   CP000117_GR
- KEGG:   ava:Ava_2715
- NMPDR:   fig|240292.3.peg.1120
- eggNOG:   COG1143
- HOGENOM:   HBG724359
- OMA:   HYSIDFG
- PhylomeDB:   Q3M9K8
- ProtClustDB:   PRK05888
- BioCyc:   AVAR240292:AVA_2715-MONOMER
- HAMAP:   MF_01351
- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR012285
- InterPro:   IPR004497
- InterPro:   IPR010226
- Gene3D:   G3DSA:1.10.1060.10
- TIGRFAMs:   TIGR00403
- TIGRFAMs:   TIGR01971

Pfam domain/function: PF00037 Fer4

EC number: 1.6.5.3

Molecular weight: Translated: 22257; Mature: 22257

Theoretical pI: Translated: 6.65; Mature: 6.65

Prosite motif: PS00198 4FE4S_FER_1; PS51379 4FE4S_FER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
4.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKFLKQVGDYAKEAVQAGRYIGQGLSVTFDHMRRRPVTVQYPYEKLIPGERFRGRIHYE
CHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHCCCCCEEECCHHHCCCCHHHCCEEEEC
FDKCIACEVCVRVCPINLPVVDWEFDKATKKKKLNHYSIDFGVCIFCGNCVEYCPTNCLS
HHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHCCCCCCCHHHEEHCCCHHHHCCCHHHH
MTEEYELATYDRHELNYDSVALGRLPYKVTDDPMVTPLRELVYLPKGVLDPHDLPANAPR
HHHHHHHHCCCCCCCCCCCEEECCCCCEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCC
AGARPEDLVEKTEA
CCCCHHHHHHHCCC
>Mature Secondary Structure
MLKFLKQVGDYAKEAVQAGRYIGQGLSVTFDHMRRRPVTVQYPYEKLIPGERFRGRIHYE
CHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHCCCCCEEECCHHHCCCCHHHCCEEEEC
FDKCIACEVCVRVCPINLPVVDWEFDKATKKKKLNHYSIDFGVCIFCGNCVEYCPTNCLS
HHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHCCCCCCCHHHEEHCCCHHHHCCCHHHH
MTEEYELATYDRHELNYDSVALGRLPYKVTDDPMVTPLRELVYLPKGVLDPHDLPANAPR
HHHHHHHHCCCCCCCCCCCEEECCCCCEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCC
AGARPEDLVEKTEA
CCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NADH; H+; ubiquinone

Specific reaction: NADH + H+ + ubiquinone = NAD+ + ubiquinol

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA