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The map label for this gene is yciO [H]

Identifier: 75908905

GI number: 75908905

Start: 3329576

End: 3330235

Strand: Direct

Name: yciO [H]

Synonym: Ava_2693

Alternate gene names: 75908905

Gene position: 3329576-3330235 (Clockwise)

Preceding gene: 75908903

Following gene: 75908906

Centisome position: 52.3

GC content: 42.42

Gene sequence:

>660_bases
ATGGCAAAAATTATCGCTGTCCATCCTGATAATCCCCAGAGTCGCAGAATAGAGGAAATAAGGTCAGCGCTTTCCAGTGG
CGCGGTGATGCTTTATCCAACTGACACAGTTTATGCGATCGGTTGTGATTTAAATGTCAAGTCTGCGGTGGAAAGAGTGC
GGCAAATCAAGCAGTTAGCAAACGATAAACCACTGACATTTTTATGTCCTTCACTGTCTAATGTAGCTACTTATGCCTTT
GTCAGTGATACAGCTTATCGAATTATGAAGCGACTAATACCAGGAACTTACACATTTTTGTTACCTGCAACTAAGTTGGT
ACCAAAATTAGTCCAAAGTCCCAAGCGTAAAACTACTGGAATTCGCGTACCAAATCATACTGTATGTTTAGCATTACTTG
AAGCCTTGGGGAATCCGATTATTTCCACTTCAGCACACATACCGCCAGATGAGGCAGGTAATGGGAAAGTCGGGATAGTT
TCAGAATCGATTACCTCAATGGCAGAGCTATTTGACCGCGTGGATAAATTAGTTGATGTGATTGTAGACACTGGACAGGA
ACCAACTTACGATGTGTCCACAATCGTTGATTTGACGGGAGATGAACCAATGATTACTAGACAAGGATTAGGTTGGGAAG
CGGTAAAAGCGTGGGTATAA

Upstream 100 bases:

>100_bases
ATAAATGTCGATAGATAAGAAACAGACGGAAAACTTACTGAAAGATTCCTCCCCTAAGTCCCTATTCCCCAATCTTCAAC
ATTCAGTAACCCAAAATTTT

Downstream 100 bases:

>100_bases
ACAACGAACTTCACCGCCTTTCTTGTCAGTTTCGGAATAGCGCAGCAAAATGCCTCCAGTTTCGTGAGCGTCATAACTAA
GAGTTAAGCTAGTGGATCTG

Product: translation factor SUA5

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 218

Protein sequence:

>219_residues
MAKIIAVHPDNPQSRRIEEIRSALSSGAVMLYPTDTVYAIGCDLNVKSAVERVRQIKQLANDKPLTFLCPSLSNVATYAF
VSDTAYRIMKRLIPGTYTFLLPATKLVPKLVQSPKRKTTGIRVPNHTVCLALLEALGNPIISTSAHIPPDEAGNGKVGIV
SESITSMAELFDRVDKLVDVIVDTGQEPTYDVSTIVDLTGDEPMITRQGLGWEAVKAWV

Sequences:

>Translated_219_residues
MAKIIAVHPDNPQSRRIEEIRSALSSGAVMLYPTDTVYAIGCDLNVKSAVERVRQIKQLANDKPLTFLCPSLSNVATYAF
VSDTAYRIMKRLIPGTYTFLLPATKLVPKLVQSPKRKTTGIRVPNHTVCLALLEALGNPIISTSAHIPPDEAGNGKVGIV
SESITSMAELFDRVDKLVDVIVDTGQEPTYDVSTIVDLTGDEPMITRQGLGWEAVKAWV
>Mature_218_residues
AKIIAVHPDNPQSRRIEEIRSALSSGAVMLYPTDTVYAIGCDLNVKSAVERVRQIKQLANDKPLTFLCPSLSNVATYAFV
SDTAYRIMKRLIPGTYTFLLPATKLVPKLVQSPKRKTTGIRVPNHTVCLALLEALGNPIISTSAHIPPDEAGNGKVGIVS
ESITSMAELFDRVDKLVDVIVDTGQEPTYDVSTIVDLTGDEPMITRQGLGWEAVKAWV

Specific function: Unknown

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Escherichia coli, GI87081864, Length=214, Percent_Identity=42.5233644859813, Blast_Score=176, Evalue=7e-46,
Organism=Escherichia coli, GI2367210, Length=141, Percent_Identity=29.0780141843972, Blast_Score=71, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR004388
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 23861; Mature: 23730

Theoretical pI: Translated: 7.44; Mature: 7.44

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKIIAVHPDNPQSRRIEEIRSALSSGAVMLYPTDTVYAIGCDLNVKSAVERVRQIKQLA
CCEEEEECCCCCHHHHHHHHHHHHHCCEEEEEECCEEEEEECCCCHHHHHHHHHHHHHHH
NDKPLTFLCPSLSNVATYAFVSDTAYRIMKRLIPGTYTFLLPATKLVPKLVQSPKRKTTG
CCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCC
IRVPNHTVCLALLEALGNPIISTSAHIPPDEAGNGKVGIVSESITSMAELFDRVDKLVDV
CCCCCHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHH
IVDTGQEPTYDVSTIVDLTGDEPMITRQGLGWEAVKAWV
HHHCCCCCCCCHHHEEEECCCCCEEEECCCCHHHHHHCC
>Mature Secondary Structure 
AKIIAVHPDNPQSRRIEEIRSALSSGAVMLYPTDTVYAIGCDLNVKSAVERVRQIKQLA
CEEEEECCCCCHHHHHHHHHHHHHCCEEEEEECCEEEEEECCCCHHHHHHHHHHHHHHH
NDKPLTFLCPSLSNVATYAFVSDTAYRIMKRLIPGTYTFLLPATKLVPKLVQSPKRKTTG
CCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCC
IRVPNHTVCLALLEALGNPIISTSAHIPPDEAGNGKVGIVSESITSMAELFDRVDKLVDV
CCCCCHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHH
IVDTGQEPTYDVSTIVDLTGDEPMITRQGLGWEAVKAWV
HHHCCCCCCCCHHHEEEECCCCCEEEECCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]