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The map label for this gene is apcC

Identifier: 75908836

GI number: 75908836

Start: 3246105

End: 3246311

Strand: Direct

Name: apcC

Synonym: Ava_2623

Alternate gene names: 75908836

Gene position: 3246105-3246311 (Clockwise)

Preceding gene: 75908835

Following gene: 75908837

Centisome position: 50.99

GC content: 44.44

Gene sequence:

>207_bases
ATGTCCCGTTTGTTTAAAATTACAGCGCTTGTTCCTAGCCTCAGCAGAACCCGTACCCAACGCGAACTACAAAACACCTA
CTTTACCAAGTTGGTTCCTTATGAAAATTGGTTCCGCGAACAACAGCGCATTCAAAAAGCAGGGGGCAAAATTATCAAGG
TGGAACTCGCAACTGGTAAGCAAGGTACTAATGCTGGGTTGCAATAA

Upstream 100 bases:

>100_bases
GCTTGATTTCCAGCCTTGGAATGATTAATTAATTAATTTGCGCTCAAGATTTTTTGAGATAAAGAATTTTTCCCAGAATA
CTGATAGGAGATTTCAAGTT

Downstream 100 bases:

>100_bases
TTCCTATAGGCCGAAAATTATTATAGTTAAGTTATGAGAGGGGTCTGTTTAGACCTCTTTTTTCATTCTCTGTGTCTATT
TTGAGAGGAGTTTTGAAACG

Product: CpcD phycobilisome linker-like protein

Products: NA

Alternate protein names: LC 7.8

Number of amino acids: Translated: 68; Mature: 67

Protein sequence:

>68_residues
MSRLFKITALVPSLSRTRTQRELQNTYFTKLVPYENWFREQQRIQKAGGKIIKVELATGKQGTNAGLQ

Sequences:

>Translated_68_residues
MSRLFKITALVPSLSRTRTQRELQNTYFTKLVPYENWFREQQRIQKAGGKIIKVELATGKQGTNAGLQ
>Mature_67_residues
SRLFKITALVPSLSRTRTQRELQNTYFTKLVPYENWFREQQRIQKAGGKIIKVELATGKQGTNAGLQ

Specific function: Rod linker protein, associated with allophycocyanin. Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side. Note=This protein occurs in the rod, it is associated with allophycocyanin (Probable)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 cpcD-like domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PYC1_NOSS1 (P80558)

Other databases:

- EMBL:   U96137
- EMBL:   BA000019
- PIR:   AG1809
- RefSeq:   NP_484067.1
- ProteinModelPortal:   P80558
- SMR:   P80558
- STRING:   P80558
- GeneID:   1103620
- GenomeReviews:   BA000019_GR
- KEGG:   ana:asr0023
- eggNOG:   NOG14273
- HOGENOM:   HBG438518
- OMA:   RIRTQRE
- ProtClustDB:   CLSK893029
- BioCyc:   NSP103690:ASR0023-MONOMER
- GO:   GO:0030089
- GO:   GO:0015979
- InterPro:   IPR011134
- InterPro:   IPR011064
- InterPro:   IPR008213
- PIRSF:   PIRSF000083

Pfam domain/function: PF01383 CpcD; SSF54580 Allophytocyanin

EC number: NA

Molecular weight: Translated: 7840; Mature: 7709

Theoretical pI: Translated: 11.36; Mature: 11.36

Prosite motif: PS51441 CPCD_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRLFKITALVPSLSRTRTQRELQNTYFTKLVPYENWFREQQRIQKAGGKIIKVELATGK
CCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEEECCCC
QGTNAGLQ
CCCCCCCC
>Mature Secondary Structure 
SRLFKITALVPSLSRTRTQRELQNTYFTKLVPYENWFREQQRIQKAGGKIIKVELATGK
CCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEEECCCC
QGTNAGLQ
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11759840; 8665889