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The map label for this gene is med [H]

Identifier: 75908812

GI number: 75908812

Start: 3220031

End: 3221080

Strand: Direct

Name: med [H]

Synonym: Ava_2598

Alternate gene names: 75908812

Gene position: 3220031-3221080 (Clockwise)

Preceding gene: 75908810

Following gene: 75908813

Centisome position: 50.58

GC content: 40.19

Gene sequence:

>1050_bases
ATGCAGCAAGACTTTAGCCGGCGTAAATTTGTATCATATGGTGCAGCTACTTTTACTACTACTCTATTACTAAAAGCTTG
CAGTAGTAATCAAACTTCTACGCCAACGGCTAGTAGTGGACAGGAAAAGTTTAAAATAGCGATCGCCCTACCTGGTGCAA
TCACAGACCAAGCTTGGAATCAGTCTGGCTATGAAGGACTAAACTTAGCTAAACAAAAGCTCAATGCAGAAGTCGCCTAT
GTGGAACAAGTCGCCCAAACTGACCAAACAGAAGCATTAACAGACTTTGCCCGTAAGGGTTATAATCTTATATTCGCCCA
CGGTGGACAATTTGATGCAGCGATAGAACAAGTCGCGCCGCAATTTCCCAATACATTTTTTGTGGGTGTAAATGGTAATA
CCAAAGCAGAAAATATCGCCTCTTTGCGAATCGACCACTTGCAAGGTAGTTATTTATGTGGCATTATTGGCGCGTCTGTA
ACTAAATCTAATAAATTAGCTTATATTGCTGGACAAGAATTTCCCGCCACACAGGAAGAACTAAGAGGATTTGAATTAGG
AGCAAAATCCGTTAACCCCAAGATACAAGTTATCTCTACATTTACGGGCGATTGGAGTGATGTTGCTAAGGCAAAAGAAG
CGACACTAGCTTTAATCTCCTCTGGGGTTGATGTCATTTATCAATGGTTTGATAGCGCCTCACCCGCAGTTTTACAAACA
GCTAGCGATAAGGGTGTTTATGCTTTTGGGAATACCAAAGACCAGTTAGATATTGCCCCCAAAGCAGTGTTAACCAGTGT
AGTTAAACGCTTAGATATAGCTATAGCTTATTTAGCGGAACTCGCCCAGCAAAAACAACTGAAAGGGCAGATATATACTA
TCGGTTTGGAACGAGAAGATATATTATCTTTAGGTAAATTTGGCGTAGCAGTGCCGGAAACTATAAAACAAAATACTTTA
AAAATAAAACAGGAAATTGTCGATCAGACAATCACCTTTGTAACTTGTCAGGAAGCTGGTAAAAATACACGTTGTATCAA
AAAAGCCTAA

Upstream 100 bases:

>100_bases
AAATAAATGAATGCAATTATTAATATAAGATTTTTATTAAACTTTTGTCGTAGAGACTTATATTAAGTTACTAAAATGAC
TACACCTCGAAAGGCAGTAT

Downstream 100 bases:

>100_bases
ATGTATTTACGTTTAGAAAATATTAGTAAACGATTTAATTCATTTATTGCTAATGATAATATCAGCTTGAGTGTTGATGC
TGGTAAAATTCATGGAATTC

Product: basic membrane lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 349; Mature: 349

Protein sequence:

>349_residues
MQQDFSRRKFVSYGAATFTTTLLLKACSSNQTSTPTASSGQEKFKIAIALPGAITDQAWNQSGYEGLNLAKQKLNAEVAY
VEQVAQTDQTEALTDFARKGYNLIFAHGGQFDAAIEQVAPQFPNTFFVGVNGNTKAENIASLRIDHLQGSYLCGIIGASV
TKSNKLAYIAGQEFPATQEELRGFELGAKSVNPKIQVISTFTGDWSDVAKAKEATLALISSGVDVIYQWFDSASPAVLQT
ASDKGVYAFGNTKDQLDIAPKAVLTSVVKRLDIAIAYLAELAQQKQLKGQIYTIGLEREDILSLGKFGVAVPETIKQNTL
KIKQEIVDQTITFVTCQEAGKNTRCIKKA

Sequences:

>Translated_349_residues
MQQDFSRRKFVSYGAATFTTTLLLKACSSNQTSTPTASSGQEKFKIAIALPGAITDQAWNQSGYEGLNLAKQKLNAEVAY
VEQVAQTDQTEALTDFARKGYNLIFAHGGQFDAAIEQVAPQFPNTFFVGVNGNTKAENIASLRIDHLQGSYLCGIIGASV
TKSNKLAYIAGQEFPATQEELRGFELGAKSVNPKIQVISTFTGDWSDVAKAKEATLALISSGVDVIYQWFDSASPAVLQT
ASDKGVYAFGNTKDQLDIAPKAVLTSVVKRLDIAIAYLAELAQQKQLKGQIYTIGLEREDILSLGKFGVAVPETIKQNTL
KIKQEIVDQTITFVTCQEAGKNTRCIKKA
>Mature_349_residues
MQQDFSRRKFVSYGAATFTTTLLLKACSSNQTSTPTASSGQEKFKIAIALPGAITDQAWNQSGYEGLNLAKQKLNAEVAY
VEQVAQTDQTEALTDFARKGYNLIFAHGGQFDAAIEQVAPQFPNTFFVGVNGNTKAENIASLRIDHLQGSYLCGIIGASV
TKSNKLAYIAGQEFPATQEELRGFELGAKSVNPKIQVISTFTGDWSDVAKAKEATLALISSGVDVIYQWFDSASPAVLQT
ASDKGVYAFGNTKDQLDIAPKAVLTSVVKRLDIAIAYLAELAQQKQLKGQIYTIGLEREDILSLGKFGVAVPETIKQNTL
KIKQEIVDQTITFVTCQEAGKNTRCIKKA

Specific function: Positive activator of the comK gene [H]

COG id: COG1744

COG function: function code R; Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the BMP lipoprotein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003760 [H]

Pfam domain/function: PF02608 Bmp [H]

EC number: NA

Molecular weight: Translated: 37800; Mature: 37800

Theoretical pI: Translated: 7.91; Mature: 7.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
0.3 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQDFSRRKFVSYGAATFTTTLLLKACSSNQTSTPTASSGQEKFKIAIALPGAITDQAWN
CCCCHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHCC
QSGYEGLNLAKQKLNAEVAYVEQVAQTDQTEALTDFARKGYNLIFAHGGQFDAAIEQVAP
CCCCCHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHCC
QFPNTFFVGVNGNTKAENIASLRIDHLQGSYLCGIIGASVTKSNKLAYIAGQEFPATQEE
CCCCEEEEEECCCCCHHHHHHEEEECCCCCEEEEEHHCCCCCCCCEEEEECCCCCCCHHH
LRGFELGAKSVNPKIQVISTFTGDWSDVAKAKEATLALISSGVDVIYQWFDSASPAVLQT
HCCHHCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCEEEE
ASDKGVYAFGNTKDQLDIAPKAVLTSVVKRLDIAIAYLAELAQQKQLKGQIYTIGLERED
CCCCCEEEECCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCHHH
ILSLGKFGVAVPETIKQNTLKIKQEIVDQTITFVTCQEAGKNTRCIKKA
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHEEEEEHHCCCCCCCCCCC
>Mature Secondary Structure
MQQDFSRRKFVSYGAATFTTTLLLKACSSNQTSTPTASSGQEKFKIAIALPGAITDQAWN
CCCCHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHCC
QSGYEGLNLAKQKLNAEVAYVEQVAQTDQTEALTDFARKGYNLIFAHGGQFDAAIEQVAP
CCCCCHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHCC
QFPNTFFVGVNGNTKAENIASLRIDHLQGSYLCGIIGASVTKSNKLAYIAGQEFPATQEE
CCCCEEEEEECCCCCHHHHHHEEEECCCCCEEEEEHHCCCCCCCCEEEEECCCCCCCHHH
LRGFELGAKSVNPKIQVISTFTGDWSDVAKAKEATLALISSGVDVIYQWFDSASPAVLQT
HCCHHCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCEEEE
ASDKGVYAFGNTKDQLDIAPKAVLTSVVKRLDIAIAYLAELAQQKQLKGQIYTIGLERED
CCCCCEEEECCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCHHH
ILSLGKFGVAVPETIKQNTLKIKQEIVDQTITFVTCQEAGKNTRCIKKA
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHEEEEEHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9335269; 9384377 [H]